View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4328-Insertion-27 (Length: 82)
Name: NF4328-Insertion-27
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-27 |
 | |
|
| [»] scaffold0618 (1 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: scaffold0618 (Bit Score: 82; Significance: 2e-39; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6896 - 6977
Alignment:
| Q |
1 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaac |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6896 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaac |
6977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44087595 - 44087676
Alignment:
| Q |
1 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaac |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087595 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaac |
44087676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-37
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 44093015 - 44092934
Alignment:
| Q |
1 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccgtaacagcacaaggaagaac |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44093015 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaaaagaacaccgtaacagcacaaggaagaac |
44092934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44067709 - 44067647
Alignment:
| Q |
1 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaacagaacaccg |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44067709 |
ttactgtccttcaaaactgcaacatctttgtcagaaaaccaatgagcaaccaatagaacaccg |
44067647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University