View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-28 (Length: 260)
Name: NF4328-Insertion-28
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-28 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 1865571 - 1865311
Alignment:
| Q |
2 |
agatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagcatctccgatatttggattaacctctacagcttttcca |
101 |
Q |
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| T |
1865571 |
agatgatgacccaccattattaaacgcgttagataaatttgaatccacaccatgtagaatagcatctccgatatttggattaacctctacagcttttcca |
1865472 |
T |
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| Q |
102 |
tcagtgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--ccccaactgattccttgttgtagactcatgtatgtattttgag |
199 |
Q |
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| T |
1865471 |
tcaatgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttgcccccccactgattccttgttgtagactcatgtttgtattttgag |
1865372 |
T |
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| Q |
200 |
tattataagtcgacacatttgatatatctccatgaaaagacatatcaataataccggatga |
260 |
Q |
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| T |
1865371 |
tattataagtcgacacatttgaaatatctccatgaaaagacatatcaataataccggatga |
1865311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 63 - 260
Target Start/End: Complemental strand, 1865762 - 1865566
Alignment:
| Q |
63 |
gcatctccgatatttggattaacctctacagcttttccatcagtgccaaacatgagaggagaagaacttgaatatccaggttttgatatgtttg--cccc |
160 |
Q |
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| T |
1865762 |
gcatctccgatatttggattaacccccgcaacttttccatcagcaccaaacatgagaggagaagaacttgaatatctaggttttgatatgtttgcccccc |
1865663 |
T |
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| Q |
161 |
aactgattccttgttgtagactcatgtatgtattttgagtattataagtcgacacatttgatatatctccatgaaaagacatatcaataataccggatga |
260 |
Q |
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| T |
1865662 |
aactgattccttgttgtagactcatgtttgtattttgagtattataa---ggcacacttgaaatatctccatgaaaagacatatcaataataccagatga |
1865566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 35440717 - 35440763
Alignment:
| Q |
108 |
ccaaacatgagaggagaagaacttgaatatccaggttttgatatgtt |
154 |
Q |
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| T |
35440717 |
ccaaacatgtgaggagaataacttgaatatccaggttttgatgtgtt |
35440763 |
T |
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