View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-30 (Length: 154)
Name: NF4328-Insertion-30
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-30 |
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| [»] scaffold0287 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 139; Significance: 4e-73; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 139; E-Value: 4e-73
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 15035 - 14893
Alignment:
| Q |
12 |
gttatgagtagtttataaatattcactctcccgcacaccttagagtctttacacaaaacataagtggaaattacataagaccaaaagcgaacaatataat |
111 |
Q |
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| T |
15035 |
gttatgagtagtttataaatattcactctcccgcacacctgagagtctttacacaaaacataagtggaaattacataagaccaaaagcgaacaatataat |
14936 |
T |
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| Q |
112 |
aaaaatagtgtttggaacataccataaggacggatttgatgtg |
154 |
Q |
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| T |
14935 |
aaaaatagtgtttggaacataccataaggacggatttgatgtg |
14893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 4e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 4e-73
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 3631050 - 3631192
Alignment:
| Q |
12 |
gttatgagtagtttataaatattcactctcccgcacaccttagagtctttacacaaaacataagtggaaattacataagaccaaaagcgaacaatataat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631050 |
gttatgagtagtttataaatattcactctcccgcacacctgagagtctttacacaaaacataagtggaaattacataagaccaaaagcgaacaatataat |
3631149 |
T |
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| Q |
112 |
aaaaatagtgtttggaacataccataaggacggatttgatgtg |
154 |
Q |
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| T |
3631150 |
aaaaatagtgtttggaacataccataaggacggatttgatgtg |
3631192 |
T |
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