View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-37 (Length: 172)
Name: NF4328-Insertion-37
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-37 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7967141 - 7966970
Alignment:
| Q |
1 |
gtcccaacatcagcctcagtgacatacgctcctgnnnnnnntaaaataaggcatatgttgaaacaattgaatgatgtatgtttagtagaatactagtact |
100 |
Q |
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| T |
7967141 |
gtcccaacatcagcctcagtgacataagctcctgaaaaaaaaaaattaaggcaaatgttgaaacaattgaatgatgtatgtttagtagaatactagtact |
7967042 |
T |
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| Q |
101 |
aaaactgttttgtgactaagtctgttacctttcacatttccatctccaagaatgacaactttgtcgcgagga |
172 |
Q |
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| T |
7967041 |
aaaactgttttgtgaataagtttgctacctttcacatttccatctccaagaatgacaactttatcccgagga |
7966970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 7954263 - 7954090
Alignment:
| Q |
1 |
gtcccaacatcagcctcagtgacatacgctcctgnnnnnnntaaaa--taaggcatatgttgaaacaattgaatgatgtatgtttagtagaatactagta |
98 |
Q |
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| T |
7954263 |
gtcccaacatcagcctcagtgacataagctcctgaaaaaaaaaaaaattaaggcaaatgttgaaacaattgaatgatgtatgtttagtagaatactagta |
7954164 |
T |
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| Q |
99 |
ctaaaactgttttgtgactaagtctgttacctttcacatttccatctccaagaatgacaactttgtcgcgagga |
172 |
Q |
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| T |
7954163 |
ctaaaactgttttgtgaataagtttgctacctttcacatttccatctccaagaatgacaactttatcccgagga |
7954090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 7942824 - 7942779
Alignment:
| Q |
123 |
tgttacctttcacatttccatctccaagaatgacaactttgtcgcg |
168 |
Q |
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| T |
7942824 |
tgttacctttgacatttccatctccaagaatgaccactttatcgcg |
7942779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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