View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-38 (Length: 199)
Name: NF4328-Insertion-38
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-38 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 39676323 - 39676521
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676323 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
39676422 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattctttttgga |
199 |
Q |
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| T |
39676423 |
tggtgcttcggcagttgtccttcgtgatggaatgaccagagctcctgtcgtaagattcaactccgctaaaagagcttctcagttgaaattctttttgga |
39676521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10046379 - 10046562
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
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||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||||| || |
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| T |
10046379 |
tgttgcttgatgggaaagagtacacggtgccgatggcaacgacggaaggttgtttggttgcaagtactaatagaggttgtaaagctatttatgtttccgg |
10046478 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagtt |
184 |
Q |
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| T |
10046479 |
tggtgcttccgcggttgtcctccgtgatggcatgaccagagcccccgtcgtaagattcaactccgctaaaagagcttctcagtt |
10046562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10873546 - 10873351
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
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|||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
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| T |
10873546 |
tgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaagcaccaatagaggctgtaaagctatttatgtttccgg |
10873447 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattcttttt |
196 |
Q |
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| T |
10873446 |
tggtgcttccgccgttgtcctccgtgacggaatgacccgagccccagtcgtaagattcaactccgccaaaagagcttctcagttgaaattcttttt |
10873351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10878617 - 10878422
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
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|||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
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| T |
10878617 |
tgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaagcaccaatagaggctgtaaagctatttatgtttccgg |
10878518 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattcttttt |
196 |
Q |
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|||||||||||| |||||||| ||||| ||||||||| |||| || |||||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
10878517 |
tggtgcttccgccgttgtcctccgtgacggaatgacccgagccccagtcgtaagattcaactccgccaaaagagcttctcagttgaaattcttttt |
10878422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10883688 - 10883493
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
| |
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|||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
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| T |
10883688 |
tgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaagcaccaatagaggctgtaaagctatttatgtttccgg |
10883589 |
T |
|
| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattcttttt |
196 |
Q |
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|||||||||||| |||||||| ||||| ||||||||| |||| || |||||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
10883588 |
tggtgcttccgccgttgtcctccgtgacggaatgacccgagccccagtcgtaagattcaactccgccaaaagagcttctcagttgaaattcttttt |
10883493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10887606 - 10887411
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
| |
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|||||||||| || || |||||||| ||||| |||||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| || |
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| T |
10887606 |
tgttgctcgacgggaatgaatacacggtgcccatggcaacaaccgaaggttgtttggttgcaagcaccaacagaggctgtaaagctatttatgtttccgg |
10887507 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattcttttt |
196 |
Q |
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||||||||||| ||||| || || || |||||||||||||| || || ||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
10887506 |
aggtgcttccgctgttgtgctccgcgacggaatgaccagagcccccgttgtaagattcaactccgccaaaagagcttctcagttgaaattcttttt |
10887411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10866759 - 10866954
Alignment:
| Q |
1 |
tgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctgg |
100 |
Q |
| |
|
|||||||||| || || || ||||| ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| || |
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| T |
10866759 |
tgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaagcaccaatagaggctgtaaagctatttatgtttccgg |
10866858 |
T |
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| Q |
101 |
tggtgcttccgcagttgtccttcgtgatggaatgaccagagctcctgtcgtaaggntcaactctgctaaaagagcttctcagttgaaattcttttt |
196 |
Q |
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||| |||||||| ||||| || || || |||||||||||||| || || ||||| |||||||||| ||||||||||| ||||||||||||||||| |
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| T |
10866859 |
tggggcttccgcggttgtgctccgcgacggaatgaccagagcccccgttgtaagattcaactctgccaaaagagcttcccagttgaaattcttttt |
10866954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 37948236 - 37948325
Alignment:
| Q |
18 |
gaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctggtggtgct |
107 |
Q |
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| T |
37948236 |
gaatacactgttccaatggcgactacagaagggtgtttggttgctagtactaatagagggtgtaaagctatatatgtttctggtggtgct |
37948325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 30709565 - 30709438
Alignment:
| Q |
21 |
tacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtaccaacagaggttgtaaagctatttatgtttctggtggtgcttccgcagttgtcc |
120 |
Q |
| |
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||||| ||||| ||||| ||||||||||| ||| | ||||||||||| || ||||| |||||||||||| ||||||||||||| ||||| | ||| | | |
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| T |
30709565 |
tacactgtgcccatggctaccactgaagggtgtcttgttgcaagtactaatagagggtgtaaagctattcatgtttctggtggagcttcttctgttttgc |
30709466 |
T |
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| Q |
121 |
ttcgtgatggaatgaccagagctcctgt |
148 |
Q |
| |
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|| | ||||||||||||||||| ||||| |
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| T |
30709465 |
ttagagatggaatgaccagagcacctgt |
30709438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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