View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4328-Insertion-43 (Length: 196)

Name: NF4328-Insertion-43
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4328-Insertion-43
NF4328-Insertion-43
[»] chr2 (2 HSPs)
chr2 (1-196)||(30782217-30782397)
chr2 (164-196)||(30244477-30244509)
[»] scaffold1178 (1 HSPs)
scaffold1178 (13-120)||(2225-2332)
[»] chr6 (3 HSPs)
chr6 (13-86)||(14434466-14434539)
chr6 (14-64)||(4479821-4479871)
chr6 (73-114)||(20737891-20737932)
[»] chr8 (4 HSPs)
chr8 (13-64)||(32850563-32850614)
chr8 (14-64)||(37177997-37178047)
chr8 (13-64)||(37173706-37173757)
chr8 (14-64)||(32854858-32854908)
[»] chr3 (1 HSPs)
chr3 (13-64)||(39163943-39163994)
[»] chr1 (1 HSPs)
chr1 (13-104)||(2009522-2009615)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 30782397 - 30782217
Alignment:
Q  1 taattgaggttcgtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782397 taattgaggttcgtgttaaatgataatttgtaattttccatattcctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagag 30782298  T
Q  101 ggtcatttaatattcctagggttttattagaactttctatattagaactttctagttatattgtgcattttcatatttctcacgatttagggaagg 196  Q
    |||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  30782297 ggtcatttaatattcctagggttttattagaactt---------------tctagttatattgtgcattttcatatttctcacgatttagggaagg 30782217  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 30244509 - 30244477
Alignment:
Q  164 tgcattttcatatttctcacgatttagggaagg 196  Q
    |||||||||||||||||| ||||||||||||||    
T  30244509 tgcattttcatatttctcccgatttagggaagg 30244477  T

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Target: scaffold1178 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 2332 - 2225
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaata 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| || || ||||||||||| | |||||| |||||  |||||||||||    
T  2332 gtgttaaatgataatttgtaattttccatattcctaggttccttaatatatctaaaagtctattcatgtatcagtaagttccagagaatgtcatttaata 2233  T
Q  113 ttcctagg 120  Q
    ||||||||    
T  2232 ttcctagg 2225  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 14434466 - 14434539
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctg 86  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||  | ||||||||||    
T  14434466 gtgttaaatgataatttgtaattttccatattcctaggttcattaatgtatctagaagtctctccatgtatctg 14434539  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 4479871 - 4479821
Alignment:
Q  14 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4479871 tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 4479821  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 20737932 - 20737891
Alignment:
Q  73 cattcatgtatctgcaagttctagagagggtcatttaatatt 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  20737932 cattcatgtatctgcaagttctagatagggtcatttaatatt 20737891  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 32850614 - 32850563
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32850614 gtgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 32850563  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 37178047 - 37177997
Alignment:
Q  14 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37178047 tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 37177997  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 37173757 - 37173706
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  37173757 gtgttaaatgataatttgtaatttttcatattcctaggttccttaatgtatc 37173706  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 32854908 - 32854858
Alignment:
Q  14 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  32854908 tgttaaatgataatttgaaattttccatattcctaggttccttaatgtatc 32854858  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 39163994 - 39163943
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 64  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39163994 gtgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 39163943  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 2009522 - 2009615
Alignment:
Q  13 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtat---ctgcaagttctagagagggtc 104  Q
    |||||||||||||||| | |||||| |||||| ||| ||||| |||||||||||||| | |||||||||||   || ||||||||| ||||||||    
T  2009522 gtgttaaatgataatt-gaaatttttcatattcctaagttccctaatgtatctagaagttcattcatgtattgactacaagttctaaagagggtc 2009615  T

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