View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4328-Insertion-44 (Length: 158)

Name: NF4328-Insertion-44
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4328-Insertion-44
NF4328-Insertion-44
[»] chr7 (10 HSPs)
chr7 (15-54)||(45709709-45709748)
chr7 (12-54)||(5934157-5934199)
chr7 (14-48)||(20335831-20335865)
chr7 (14-48)||(37085549-37085583)
chr7 (14-54)||(25242032-25242072)
chr7 (14-54)||(25655228-25655268)
chr7 (14-54)||(29916808-29916848)
chr7 (15-54)||(25590647-25590686)
chr7 (12-51)||(33362671-33362710)
chr7 (15-54)||(48771974-48772013)
[»] chr5 (7 HSPs)
chr5 (1-48)||(30109295-30109342)
chr5 (15-48)||(8779311-8779344)
chr5 (15-48)||(29173532-29173565)
chr5 (14-48)||(16773849-16773883)
chr5 (14-48)||(37258366-37258400)
chr5 (14-54)||(43442232-43442272)
chr5 (13-56)||(87422-87465)
[»] chr3 (18 HSPs)
chr3 (14-48)||(36720423-36720457)
chr3 (12-48)||(8075125-8075161)
chr3 (15-54)||(44743856-44743895)
chr3 (16-54)||(9557356-9557394)
chr3 (14-48)||(10445139-10445173)
chr3 (14-52)||(21960589-21960627)
chr3 (14-52)||(25035743-25035781)
chr3 (14-48)||(27259203-27259237)
chr3 (14-48)||(47454617-47454651)
chr3 (14-54)||(4844511-4844551)
chr3 (14-54)||(4870207-4870247)
chr3 (14-54)||(30311342-30311382)
chr3 (15-55)||(45229269-45229309)
chr3 (14-54)||(46518664-46518704)
chr3 (14-54)||(51903878-51903918)
chr3 (14-54)||(52769983-52770023)
chr3 (15-54)||(2667898-2667937)
chr3 (15-54)||(31788971-31789010)
[»] chr8 (12 HSPs)
chr8 (11-48)||(29858046-29858083)
chr8 (14-50)||(31408122-31408158)
chr8 (15-58)||(3721158-3721201)
chr8 (14-48)||(968404-968438)
chr8 (14-48)||(16852382-16852416)
chr8 (14-52)||(19703487-19703525)
chr8 (14-47)||(11928731-11928764)
chr8 (12-48)||(27750772-27750808)
chr8 (19-54)||(4830523-4830558)
chr8 (16-47)||(12988471-12988502)
chr8 (14-65)||(31298662-31298713)
chr8 (12-47)||(33727871-33727906)
[»] chr2 (14 HSPs)
chr2 (12-61)||(34041586-34041635)
chr2 (14-49)||(7599981-7600016)
chr2 (14-52)||(33582011-33582049)
chr2 (14-52)||(37480113-37480151)
chr2 (14-48)||(39715034-39715068)
chr2 (14-51)||(21939123-21939160)
chr2 (7-48)||(29503313-29503354)
chr2 (14-51)||(32687520-32687557)
chr2 (12-48)||(10449064-10449100)
chr2 (12-48)||(21195674-21195710)
chr2 (14-54)||(31573641-31573681)
chr2 (12-48)||(42860390-42860426)
chr2 (14-65)||(4438979-4439030)
chr2 (15-54)||(11738045-11738084)
[»] scaffold0299 (1 HSPs)
scaffold0299 (14-54)||(11564-11604)
[»] chr6 (5 HSPs)
chr6 (14-54)||(24641190-24641230)
chr6 (10-48)||(10338170-10338208)
chr6 (14-48)||(33549146-33549180)
chr6 (14-54)||(16535220-16535260)
chr6 (14-53)||(30127437-30127476)
[»] chr4 (11 HSPs)
chr4 (14-54)||(12798720-12798760)
chr4 (14-54)||(39509106-39509146)
chr4 (14-54)||(47044753-47044793)
chr4 (14-56)||(5450127-5450169)
chr4 (14-48)||(9936961-9936995)
chr4 (14-48)||(30938219-30938253)
chr4 (12-54)||(38869804-38869846)
chr4 (14-51)||(52254404-52254441)
chr4 (5-48)||(19238567-19238611)
chr4 (5-48)||(19112950-19112993)
chr4 (14-45)||(19229208-19229239)
[»] chr1 (16 HSPs)
chr1 (14-54)||(8177182-8177222)
chr1 (14-54)||(12587306-12587346)
chr1 (14-54)||(51814530-51814570)
chr1 (14-61)||(25297801-25297848)
chr1 (14-44)||(21547480-21547510)
chr1 (14-48)||(24047102-24047136)
chr1 (14-56)||(33700773-33700815)
chr1 (14-56)||(51703813-51703855)
chr1 (14-51)||(7219918-7219955)
chr1 (14-54)||(2799898-2799938)
chr1 (12-48)||(6122836-6122872)
chr1 (14-54)||(15786320-15786360)
chr1 (14-45)||(3799951-3799982)
chr1 (14-61)||(17439946-17439993)
chr1 (14-65)||(22049828-22049879)
chr1 (14-53)||(26232361-26232400)
[»] scaffold0258 (1 HSPs)
scaffold0258 (14-48)||(15323-15357)
[»] scaffold0008 (1 HSPs)
scaffold0008 (14-51)||(49345-49382)
[»] scaffold0291 (1 HSPs)
scaffold0291 (14-54)||(2470-2510)
[»] scaffold0194 (1 HSPs)
scaffold0194 (14-54)||(13046-13086)
[»] scaffold0118 (1 HSPs)
scaffold0118 (14-54)||(41633-41673)


Alignment Details
Target: chr7 (Bit Score: 36; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 45709709 - 45709748
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  45709709 aatcgaacctgagacctcgaggaggagcacactctcagat 45709748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 5934199 - 5934157
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||    
T  5934199 gggaatcgaacatgaaacctcaaggaggagcacactcccagat 5934157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 20335831 - 20335865
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  20335831 gaatcgaacctgagacctcgaggaggagcacactc 20335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 37085549 - 37085583
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||||||||||| ||||||||||    
T  37085549 gaatcgaacctgaaacctcgaggatgagcacactc 37085583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 25242072 - 25242032
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||| |||| |||||||||||||||| ||||||||||    
T  25242072 gaatcgaatctgagacctcgaggaggagcatactctcagat 25242032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 25655228 - 25655268
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||||||||| |||||||| ||||||| |||||    
T  25655228 gaatcgaacctgaaaccttgaggaggatcacactcacagat 25655268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 29916808 - 29916848
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| ||||||||||||||||| ||||    
T  29916808 gaatcgaacctgagaccttgaggaggagcacactcttagat 29916848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 25590686 - 25590647
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||| || ||||||||||||||||||||| |||||    
T  25590686 aatcgaacccgagacctcgaggaggagcacactcccagat 25590647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 33362710 - 33362671
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    |||||| |||||| |||||||||||||||||||| |||||    
T  33362710 gggaattgaacctcaaacctcgaggaggagcacattctca 33362671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 48772013 - 48771974
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||| ||||| ||||||||||||||| |||||    
T  48772013 aatcgaacctgagacctcaaggaggagcacactcccagat 48771974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30109295 - 30109342
Alignment:
Q  1 attagtaccgggggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  30109295 attagcaccgggggaatcgaacctgagacctcaaggaggagcacactc 30109342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 8779311 - 8779344
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  8779311 aatcgaacctgaaacctcgaggaggagcacactc 8779344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 29173565 - 29173532
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  29173565 aatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 16773883 - 16773849
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  16773883 gaatcgaacctgagacctcgaggaggagcacactc 16773849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 37258366 - 37258400
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||||| ||||||||||||||||    
T  37258366 gaatcgaacctgaaaccttgaggaggagcacactc 37258400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 43442272 - 43442232
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  43442272 gaatcgaacctgagaccttgaggaggagcacactcccagat 43442232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 87422 - 87465
Alignment:
Q  13 ggaatcgaacctgaaacctcgaggaggagcacactctcagattc 56  Q
    |||||| ||||||| |||| |||||||||||||||| |||||||    
T  87422 ggaatcaaacctgagaccttgaggaggagcacactcccagattc 87465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 36720457 - 36720423
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||||||||||||||||||||||    
T  36720457 gaatcgaacctgaaacctcgaggaggagcacactc 36720423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 8075125 - 8075161
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  8075125 gggaatcgaacctgaaaccttgaggaggagcacactc 8075161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 44743856 - 44743895
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  44743856 aatcgaacctgagacctcgaggaggagcacactcccagat 44743895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 9557394 - 9557356
Alignment:
Q  16 atcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  9557394 atcgaacctgagatctcgaggaggagcacactctcagat 9557356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 10445139 - 10445173
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  10445139 gaatcgaacctgagacctcgaggaggagcacactc 10445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 21960627 - 21960589
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcag 52  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  21960627 gaatcgaatctgagacctcgaggaggagcacactctcag 21960589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 25035781 - 25035743
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcag 52  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  25035781 gaatcgaacctgaaatctcgaggaggagcacattctcag 25035743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 27259237 - 27259203
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||| |||||||||||||||||||||||||||||    
T  27259237 gaatcaaacctgaaacctcgaggaggagcacactc 27259203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 47454617 - 47454651
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  47454617 gaatcgaacctgagacctcgaggaggagcacactc 47454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4844511 - 4844551
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  4844511 gaatcgatcctgagacctcgaggaggagcacactcccagat 4844551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4870207 - 4870247
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||| ||||| ||||||||||||||||||||| |||||    
T  4870207 gaatcgatcctgagacctcgaggaggagcacactcccagat 4870247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 30311382 - 30311342
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  30311382 gaatcgaacctgagaccttgaggaggagcacactcccagat 30311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 45229309 - 45229269
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagatt 55  Q
    |||||||||||| ||| ||||||||||||||||| ||||||    
T  45229309 aatcgaacctgagaccacgaggaggagcacactcccagatt 45229269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 46518704 - 46518664
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||| |||||||||||| |||||||||||||||| |||||    
T  46518704 gaatcaaacctgaaaccttgaggaggagcacactcccagat 46518664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 51903878 - 51903918
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  51903878 gaatcgaacctgagaccacgaggaggagcacactcccagat 51903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 52769983 - 52770023
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  52769983 gaatcgaacctgagacctcaaggaggagcacactcccagat 52770023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 2667937 - 2667898
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||| |||||||||| |||||||||| |||||    
T  2667937 aatcgaacctgagacctcgaggaagagcacactcccagat 2667898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 31788971 - 31789010
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||| ||||| ||||||||||||||||||||||| |||||    
T  31788971 aatcaaacctaaaacctcgaggaggagcacactcccagat 31789010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 29858046 - 29858083
Alignment:
Q  11 ggggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||| |||||||||||||||||||||    
T  29858046 ggggaatcgaacctgagacctcgaggaggagcacactc 29858083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 31408122 - 31408158
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctc 50  Q
    |||||||||||||||||| ||||||||||||||||||    
T  31408122 gaatcgaacctgaaaccttgaggaggagcacactctc 31408158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 3721158 - 3721201
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagattcta 58  Q
    ||||||||||||||| |||||||||||||||||| || ||||||    
T  3721158 aatcgaacctgaaacatcgaggaggagcacactcccatattcta 3721201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 968438 - 968404
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  968438 gaatcgaacctgagacctcgaggaggagcacactc 968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 16852416 - 16852382
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  16852416 gaatcgaacctgagacctcgaggaggagcacactc 16852382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 19703487 - 19703525
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcag 52  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  19703487 gaatcgaacctgagaccttgaggaggagcacactctcag 19703525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 11928731 - 11928764
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacact 47  Q
    ||||||||||||| ||||||||||||||||||||    
T  11928731 gaatcgaacctgagacctcgaggaggagcacact 11928764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 27750808 - 27750772
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  27750808 gggaatcgaacctgagaccttgaggaggagcacactc 27750772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 4830558 - 4830523
Alignment:
Q  19 gaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||| ||||||||||||| |||||||||||||    
T  4830558 gaacctgagacctcgaggaggaacacactctcagat 4830523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 12988502 - 12988471
Alignment:
Q  16 atcgaacctgaaacctcgaggaggagcacact 47  Q
    |||||||||||||||| |||||||||||||||    
T  12988502 atcgaacctgaaaccttgaggaggagcacact 12988471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 31298662 - 31298713
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattctaagttaat 65  Q
    ||||||||||| ||| ||| |||||||| |||||||||||| ||||| ||||    
T  31298662 gaatcgaacctaaaatctcaaggaggagtacactctcagatcctaagctaat 31298713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 33727871 - 33727906
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacact 47  Q
    ||||||||||||||| |||| |||||||||||||||    
T  33727871 gggaatcgaacctgagaccttgaggaggagcacact 33727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 34041586 - 34041635
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactctcagattctaagt 61  Q
    ||||||| ||||||| |||| |||||||||||||||||||||| ||||||    
T  34041586 gggaatcaaacctgagaccttgaggaggagcacactctcagatcctaagt 34041635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 7599981 - 7600016
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactct 49  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7599981 gaatcgaacatgaaacctcgaggaggagcacactct 7600016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 33582049 - 33582011
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcag 52  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  33582049 gaatcgaacctgagacctcaaggaggagcacactctcag 33582011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 37480151 - 37480113
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcag 52  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  37480151 gaatcgaacctgagaccttgaggaggagcacactctcag 37480113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 39715068 - 39715034
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  39715068 gaatcgaacctgagacctcgaggaggagcacactc 39715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 21939123 - 21939160
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  21939123 gaatcgaacctgagatctcgaggaggagcacactctca 21939160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 29503354 - 29503313
Alignment:
Q  7 accgggggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||| ||||||||||||| |||| ||||||||||||||||    
T  29503354 accgggagaatcgaacctgagaccttgaggaggagcacactc 29503313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 32687557 - 32687520
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  32687557 gaatcgaacctgagacctcgaggaggaacacactctca 32687520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10449100 - 10449064
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10449100 gggaatcgaacatgaaaccttgaggaggagcacactc 10449064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 21195674 - 21195710
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  21195674 gggaatcgaacctgagaccttgaggaggagcacactc 21195710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 31573641 - 31573681
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  31573641 gaatcgaacctgagacatcaaggaggagcacactctcagat 31573681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 42860426 - 42860390
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  42860426 gggaatcgaacttgagacctcgaggaggagcacactc 42860390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 4438979 - 4439030
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattctaagttaat 65  Q
    ||||||||| ||  |||| |||||||||||||||||||||| | ||||||||    
T  4438979 gaatcgaacatgcgaccttgaggaggagcacactctcagatcccaagttaat 4439030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 11738045 - 11738084
Alignment:
Q  15 aatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||||| | |||||||| |||||||||||||    
T  11738045 aatcgaacctgaaactttgaggaggaacacactctcagat 11738084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 11604 - 11564
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  11604 gaatcgaacctgagacctcgaggaggagcacactcccagat 11564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.0000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 24641190 - 24641230
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  24641190 gaatcgaaccttaaacctcgaggaggagcacactcccagat 24641230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 10338170 - 10338208
Alignment:
Q  10 gggggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  10338170 gggggaatcgaacctgagaccttgaggaggagcacactc 10338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 33549180 - 33549146
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  33549180 gaatcgaacctgagacctcgaggaggagcacactc 33549146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 16535260 - 16535220
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  16535260 gaatcgaacctgaaacttttaggaggagcacactctcagat 16535220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 30127476 - 30127437
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcaga 53  Q
    ||||||||||||| ||||||| ||||||||||||| ||||    
T  30127476 gaatcgaacctgagacctcgaagaggagcacactcccaga 30127437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.0000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 12798760 - 12798720
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  12798760 gaatcgaacctgaaacctcgaggagcagcacactcccagat 12798720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 39509146 - 39509106
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  39509146 gaatcgaacctgagacctcgaggaggagcacactcccagat 39509106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 47044793 - 47044753
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  47044793 gaatcgaacctgagacctcgaggaggagcaaactctcagat 47044753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 5450169 - 5450127
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattc 56  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  5450169 gaatcgaatctgaaaccttgaggaggagcacactcccagattc 5450127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 9936961 - 9936995
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||||||||||| ||||||||||||||||||    
T  9936961 gaatcgaacctgaaacttcgaggaggagcacactc 9936995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 30938219 - 30938253
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  30938219 gaatcgaacctgagacctcgaggaggagcacactc 30938253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 38869846 - 38869804
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||||| |||| |||||||||||||||| |||||    
T  38869846 gggaatcgaacctgagaccttgaggaggagcacactcccagat 38869804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 52254404 - 52254441
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  52254404 gaatctaacctgaaacctcaaggaggagcacactctca 52254441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 19238567 - 19238611
Alignment:
Q  5 gtaccgggg-gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||| |||||||||| || |||||||||||||||||||||    
T  19238567 gtaccggggagaatcgaacccgagacctcgaggaggagcacactc 19238611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 19112993 - 19112950
Alignment:
Q  5 gtaccgggggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    |||||||| ||||||||||||| | ||||| |||||||||||||    
T  19112993 gtaccgggagaatcgaacctgataactcgaagaggagcacactc 19112950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 19229208 - 19229239
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcaca 45  Q
    ||||||||||||| ||||||||||||||||||    
T  19229208 gaatcgaacctgagacctcgaggaggagcaca 19229239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.0000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8177182 - 8177222
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  8177182 gaatcgaacctgaaaccttgaggaggagcacactcccagat 8177222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 12587346 - 12587306
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  12587346 gaatcgaacctgagacctcgaggaggagcacactcacagat 12587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 51814570 - 51814530
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  51814570 gaatcgaacctgagaccttgaggaggagcacactctcagat 51814530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 25297848 - 25297801
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattctaagt 61  Q
    ||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  25297848 gaatcaaacctcagacctcgaggaggagcacactctcagatcctaagt 25297801  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 21547480 - 21547510
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcac 44  Q
    |||||||||||||||||||||||||||||||    
T  21547480 gaatcgaacctgaaacctcgaggaggagcac 21547510  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 24047102 - 24047136
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||| |||||||||||||||||||||||||    
T  24047102 gaatcgaacttgaaacctcgaggaggagcacactc 24047136  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 33700773 - 33700815
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattc 56  Q
    ||||||||||||| |||| |||||||||||||||| |||||||    
T  33700773 gaatcgaacctgagaccttgaggaggagcacactcccagattc 33700815  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 51703855 - 51703813
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattc 56  Q
    |||||||||||||||| | |||||||||||||||| |||||||    
T  51703855 gaatcgaacctgaaactttgaggaggagcacactcccagattc 51703813  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 7219918 - 7219955
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    ||||||||||||| || |||||||||||||||||||||    
T  7219918 gaatcgaacctgagacttcgaggaggagcacactctca 7219955  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2799938 - 2799898
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  2799938 gaatcgaacctgagaccttgaggaggagcacactcccagat 2799898  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 6122872 - 6122836
Alignment:
Q  12 gggaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  6122872 gggaatcgaacctgagaccttgaggaggagcacactc 6122836  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 15786320 - 15786360
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  15786320 gaatcgaacctgagaccttgaggaggagcacactcccagat 15786360  T

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Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 3799982 - 3799951
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcaca 45  Q
    |||||||||||||||| |||||||||||||||    
T  3799982 gaatcgaacctgaaacttcgaggaggagcaca 3799951  T

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Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 17439993 - 17439946
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattctaagt 61  Q
    ||||| ||| ||| ||||||||||||||||||||| ||||| ||||||    
T  17439993 gaatcaaacatgagacctcgaggaggagcacactcccagatcctaagt 17439946  T

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Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 22049828 - 22049879
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagattctaagttaat 65  Q
    |||||||| || |||||| |||||| ||||||||||||||| | ||||||||    
T  22049828 gaatcgaatctcaaaccttgaggagaagcacactctcagatcccaagttaat 22049879  T

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Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 26232361 - 26232400
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcaga 53  Q
    |||| |||||||| ||||| ||||||||||||||||||||    
T  26232361 gaattgaacctgagacctcaaggaggagcacactctcaga 26232400  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 15323 - 15357
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactc 48  Q
    ||||||||||||| |||||||||||||||||||||    
T  15323 gaatcgaacctgagacctcgaggaggagcacactc 15357  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 49382 - 49345
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctca 51  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  49382 gaatcgaacctgatacctcgaagaggagcacactctca 49345  T

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Target: scaffold0291 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 2470 - 2510
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  2470 gaatcgaacctgagaccttgaggaggagcacactcccagat 2510  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 13046 - 13086
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  13046 gaatcgaacctgagaccttgaggaggagcacactcccagat 13086  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41633 - 41673
Alignment:
Q  14 gaatcgaacctgaaacctcgaggaggagcacactctcagat 54  Q
    |||| |||||||| |||||||||||||||| ||||||||||    
T  41633 gaattgaacctgagacctcgaggaggagcatactctcagat 41673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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