View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-48 (Length: 166)
Name: NF4328-Insertion-48
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-48 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 5e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 19542559 - 19542394
Alignment:
| Q |
1 |
tacattatgttgcttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaa |
100 |
Q |
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| T |
19542559 |
tacattatgttgcttttcatacatattcctttgaaggattgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagtaa |
19542460 |
T |
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| Q |
101 |
ttacattactggtgaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggt |
166 |
Q |
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| T |
19542459 |
ttacattactggtgaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggt |
19542394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 37333047 - 37333212
Alignment:
| Q |
1 |
tacattatgttgcttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaa |
100 |
Q |
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| T |
37333047 |
tacactatgttgcatttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatag |
37333146 |
T |
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| Q |
101 |
ttacattactggtgaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggt |
166 |
Q |
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| T |
37333147 |
ttacatcactggtgaagaggttttgagggatacttggcaaagtaacatgagttactcaaaatgggt |
37333212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 37323838 - 37324003
Alignment:
| Q |
1 |
tacattatgttgcttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaa |
100 |
Q |
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| T |
37323838 |
tacactatgttgcatttcatacatatggatttgaaggattgttcaagaatgagtatgaagggttaatattttctactaaaaacggacaaggcacaaatgg |
37323937 |
T |
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| Q |
101 |
ttacattactggtgaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggt |
166 |
Q |
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| T |
37323938 |
ttacattagtggtgaagaggttttgagagatatttggcaaagtaacatgagttactcaaaatgggt |
37324003 |
T |
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