View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-55 (Length: 74)
Name: NF4328-Insertion-55
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-55 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 26133811 - 26133878
Alignment:
| Q |
5 |
ttaacctgagacaagtgtaccctaaaagtgatgaacaaaaagcttgaaatctcaaaacataaagaaat |
72 |
Q |
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| T |
26133811 |
ttaacctgagacaagtgtaccttaaaattgatgaacaaaaagcttgaaatctcaaaatagaaagaaat |
26133878 |
T |
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Target: chr7 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 8475499 - 8475449
Alignment:
| Q |
23 |
accctaaaagtgatgaacaaaaagcttgaaatctcaaaacataaagaaatca |
74 |
Q |
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| T |
8475499 |
accctaaaagtgataaacataaagct-gaaatctcaaaacacaacgaaatca |
8475449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 11568013 - 11568063
Alignment:
| Q |
23 |
accctaaaagtgatgaacaaaaagcttgaaatctcaaaacataaagaaatca |
74 |
Q |
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|||||||||||||| |||| ||||| ||||||||||||| | |||||||||| |
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| T |
11568013 |
accctaaaagtgataaacataaagc-tgaaatctcaaaatacaaagaaatca |
11568063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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