View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-58 (Length: 56)
Name: NF4328-Insertion-58
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-58 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 44; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 2777852 - 2777902
Alignment:
| Q |
5 |
gaattatatattgggcttaagcaatgatgagaacaattggggcaggtttgtg |
56 |
Q |
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| T |
2777852 |
gaattatatattgggcttaagcaatgatgagaacaatt-gggcaggtttgtg |
2777902 |
T |
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Target: chr4 (Bit Score: 44; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-17
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 55320557 - 55320507
Alignment:
| Q |
5 |
gaattatatattgggcttaagcaatgatgagaacaattggggcaggtttgtg |
56 |
Q |
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| T |
55320557 |
gaattatatattgggcttaagcaatgatgagaacaatt-gggcaggtttgtg |
55320507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 31951658 - 31951609
Alignment:
| Q |
4 |
agaattatatattgggcttaagcaatgatgagaacaattggggcaggtttg |
54 |
Q |
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| T |
31951658 |
agaattatatattgggcttaagcaatgatgtgaacaatt-gggcaggtttg |
31951609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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