View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328-Insertion-7 (Length: 260)
Name: NF4328-Insertion-7
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 5390934 - 5390686
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagatt |
111 |
Q |
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| T |
5390934 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagatt |
5390835 |
T |
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| Q |
112 |
ggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattc |
211 |
Q |
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| T |
5390834 |
ggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtctaaggaacatggattcttgggatttaggaattctaagaatgt |
5390735 |
T |
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| Q |
212 |
tttcattagttcgattgacaagactaaagtctacaagattgtgccatga |
260 |
Q |
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| T |
5390734 |
gttcattagttggattgacaaaactaaagtgtacaagattgtgccatga |
5390686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 5399653 - 5399405
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagatt |
111 |
Q |
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| T |
5399653 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagatt |
5399554 |
T |
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| Q |
112 |
ggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattc |
211 |
Q |
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| T |
5399553 |
ggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtctaaggaacatggattcttaggatttaggaattctaagaattc |
5399454 |
T |
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| Q |
212 |
tttcattagttcgattgacaagactaaagtctacaagattgtgccatga |
260 |
Q |
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| T |
5399453 |
gttcattagttggattgataagacaaaagcttacaagattgtgccatga |
5399405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 5394472 - 5394224
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagatt |
111 |
Q |
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| T |
5394472 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagatt |
5394373 |
T |
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| Q |
112 |
ggtggtttgcagattttatgttgagagtggagggtgtgttggatagtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattc |
211 |
Q |
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| T |
5394372 |
ggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagctaaggaacatggattcataggatttaggaattctaagaattc |
5394273 |
T |
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| Q |
212 |
tttcattagttcgattgacaagactaaagtctacaagattgtgccatga |
260 |
Q |
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| T |
5394272 |
attcattagttggattgacaagacaaaagcttacaagattgtgccatga |
5394224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 3818794 - 3818681
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagatt |
111 |
Q |
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|||| |||| |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||| | || ||||| |||||||||| || | |
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| T |
3818794 |
ttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtaacgaagctggaagaagttgctgagt |
3818695 |
T |
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| Q |
112 |
ggtggtttgcagat |
125 |
Q |
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| T |
3818694 |
ggtggtttgcagat |
3818681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 47339083 - 47339196
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagatt |
111 |
Q |
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|||| |||| |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||| | || ||||| |||||||||| || | |
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| T |
47339083 |
ttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtgacgaagctggaagaagttgctgagt |
47339182 |
T |
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| Q |
112 |
ggtggtttgcagat |
125 |
Q |
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| T |
47339183 |
ggtggtttgcagat |
47339196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 47347553 - 47347615
Alignment:
| Q |
12 |
ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaat |
74 |
Q |
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| T |
47347553 |
ttgaagttgtcggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaat |
47347615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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