View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_high_1 (Length: 424)
Name: NF4328_high_1
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 5680616 - 5680358
Alignment:
| Q |
16 |
ctgaaagattattagcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagt |
115 |
Q |
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| T |
5680616 |
ctgaaagattattggcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagt |
5680517 |
T |
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| Q |
116 |
ttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagataaacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
5680516 |
ttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatctcctttaatattgttctctccaagttcaactagataaacc |
5680417 |
T |
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| Q |
216 |
tgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
274 |
Q |
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| T |
5680416 |
tgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
5680358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 5689926 - 5689719
Alignment:
| Q |
16 |
ctgaaagattattagcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagt |
115 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||| | | |||||| |||||||| |
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| T |
5689926 |
ctgagagattattggcttcatttggtgtaagtaatgctgcaaaaccattgaaagtgtgtttataactataaagaagggaaaccctagcttcctcctcagt |
5689827 |
T |
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| Q |
116 |
ttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagataaacc |
215 |
Q |
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| T |
5689826 |
ttcttttaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatgtccat---tattgtgctctccaaattccactagataaacc |
5689730 |
T |
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| Q |
216 |
tgtgagaaaat |
226 |
Q |
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||||||||||| |
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| T |
5689729 |
tgtgagaaaat |
5689719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 5680292 - 5680215
Alignment:
| Q |
340 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatgatgatgt |
417 |
Q |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatgatgatgt |
5680215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
340 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
384 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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