View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_high_5 (Length: 240)
Name: NF4328_high_5
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6241891 - 6242114
Alignment:
| Q |
1 |
aatttactgtagcaagcaatttgtaattataattaggagtggatctctgtgtttcttcttaacatccatcatattttttcttcattgaatatggaattga |
100 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6241891 |
aatttactgtagcaagcaatttggaattaaaattaggagtggatctctgtatttcttcttaacatccatcatcttttttcttcattgaatatggaattga |
6241990 |
T |
|
| Q |
101 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaagtacaatcagagaaaaagagttaggagagatttgctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6241991 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggttaaggacaatcagagaaaaagagttaggagagatttgctgca |
6242090 |
T |
|
| Q |
201 |
cttttgcttgaatattaggtgttg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
6242091 |
cttttgcttgaatattaggtgttg |
6242114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3604174 - 3604397
Alignment:
| Q |
1 |
aatttactgtagcaagcaatttgtaattataattaggagtggatctctgtgtttcttcttaacatccatcatattttttcttcattgaatatggaattga |
100 |
Q |
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||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
3604174 |
aatttacagtagcaaggaatttggaattagaattaggagtggatctctgtgtttcttcttaacatctatcatcttttttcttcattgaatatggaattga |
3604273 |
T |
|
| Q |
101 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaagtacaatcagagaaaaagagttaggagagatttgctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3604274 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaaggacaatcagagaaaaagagttaggagagatttgctgca |
3604373 |
T |
|
| Q |
201 |
cttttgcttgaatattaggtgttg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3604374 |
cttttgcttgaatattaggtgttg |
3604397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 27948701 - 27948750
Alignment:
| Q |
87 |
gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaat |
136 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
27948701 |
gaatttggaattgatgaatggaagaggaagaagagtttggataatagaat |
27948750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40739439 - 40739216
Alignment:
| Q |
1 |
aatttactgtagcaagcaatttgtaattataattaggagtggatctctgtgtttcttcttaacatccatcatattttttcttcattgaatatggaattga |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40739439 |
aatttactgtagcaagcattttggaattagaattaggagtggatctccgtgtttcttcttaacatccatcatcttttttcttcattgaatatggaattga |
40739340 |
T |
|
| Q |
101 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaagtacaatcagagaaaaagagttaggagagatttgctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
40739339 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaaggacaatcagagaaaaagagttaggagagaattactgca |
40739240 |
T |
|
| Q |
201 |
cttttgcttgaatattaggtgttg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
40739239 |
cttttgcttgaatattaggtgttg |
40739216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 29466644 - 29466421
Alignment:
| Q |
1 |
aatttactgtagcaagcaatttgtaattataattaggagtggatctctgtgtttcttcttaacatccatcatattttttcttcattgaatatggaattga |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29466644 |
aatttattgtagcaagcaatttggaattagaattaggaatggatctttgtgtttcttcttaacatccatcatcttttttcttcattgaatatggaattga |
29466545 |
T |
|
| Q |
101 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatatgattttttggtgaagtacaatcagagaaaaagagttaggagagatttgctgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
29466544 |
tgaatggaagaggaagaagagttgggataaaagaattggaatgatgtgattttttggtgaaggacaatcaaagaaaaagagttaggagagatttgctgca |
29466445 |
T |
|
| Q |
201 |
cttttgcttgaatattaggtgttg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
29466444 |
cttttgcttgaatattaggtgttg |
29466421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 23757056 - 23756996
Alignment:
| Q |
87 |
gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgatat |
147 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
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|
| T |
23757056 |
gaatctggaattgatgaatggaagaggaagaagagtttggataatagaattgaaatgatat |
23756996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 5432538 - 5432479
Alignment:
| Q |
87 |
gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgata |
146 |
Q |
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|
|||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||||| |
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|
| T |
5432538 |
gaatctggaattgatgaatggaagaggaagaagagtttggataatagaatttgaatgata |
5432479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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