View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_low_2 (Length: 361)
Name: NF4328_low_2
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 32883222 - 32883502
Alignment:
| Q |
9 |
acatcatcactaa---tatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggcta |
105 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32883222 |
acatcatcactaaacttatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggcta |
32883321 |
T |
|
| Q |
106 |
tacctttttatattttatctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgccggggctgtgatgttt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32883322 |
tacctttttatattttatctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgctggggctgtgatgttt |
32883421 |
T |
|
| Q |
206 |
ccttttgcatactttcttgagaggtacatgtacatttctcttcaaaatgcatcaaa-ttcatagtttgtgtttgaccgagt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
32883422 |
ccttttgcatactttcttgagaggtacatgtacatttctcttcgaaatgcatcaaagttcatagtttgtgtttggccgagt |
32883502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 32917795 - 32918015
Alignment:
| Q |
22 |
tatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggctatacctttttatatttt |
121 |
Q |
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||||||| ||||| ||||||||||||| | || || ||| |||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
32917795 |
tatggagcaaaaaatattttctcctctgcttggattcaagaagttcaagccacacttgatcatggtcttagcccaagttggctataccttcttatatttt |
32917894 |
T |
|
| Q |
122 |
atctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgccggggctgtgatgtttccttttgcatactttc |
221 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||| | ||||||| | |||||||| ||||||| |
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| T |
32917895 |
atcagtgaagcttccttcaatcatggaatgagtccttatgtttatgttacatatcgacatattttcgccggtgttgtgatgctcccttttgcgtactttc |
32917994 |
T |
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| Q |
222 |
ttgagaggtacatgtacattt |
242 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
32917995 |
ttgagaggtacatgcacattt |
32918015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 32933824 - 32934053
Alignment:
| Q |
22 |
tatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggctatacctttttatatttt |
121 |
Q |
| |
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||||||| ||||| |||| |||| ||| | |||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| || ||| |||| |
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| T |
32933824 |
tatggagcaaaaaatattctctcttctgcttgtatacagagagttcaagccacacctgctcatggtcttaacccaagttggctatactttaatatttttt |
32933923 |
T |
|
| Q |
122 |
atctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgccggggctgtgatgtttccttttgcatactttc |
221 |
Q |
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||| || || |||| ||||||||||||||||||||||||||||||||||| || ||||| ||| |||| ||| || ||||||||||||||||||||||| |
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| T |
32933924 |
atcactcaagcttcgttcaatcatggaatgagtccttatgtttatgttacgtaccggcacgttgtcgctgggattgcgatgtttccttttgcatactttc |
32934023 |
T |
|
| Q |
222 |
ttgagaggtacatgtacatttctcttcaaa |
251 |
Q |
| |
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| ||||||||||||||||||||| |||||| |
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| T |
32934024 |
tggagaggtacatgtacatttcttttcaaa |
32934053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 32949840 - 32950021
Alignment:
| Q |
61 |
agagttcaagccacacctggtcatggttttagcccaagttggctatacctttttatattttatctctgaatcttccttcaatcatggaatgagtccttat |
160 |
Q |
| |
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|||||| |||||||||||| ||||| | || ||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
32949840 |
agagtttaagccacacctgctcatgctcctaacccaagttggctacactttaatatattttatcactgaagcttccttcaatcatggaatgagtccttat |
32949939 |
T |
|
| Q |
161 |
gtttatgttacctatcggcatgttctcgccggggctgtgatgtttccttttgcatactttcttgagaggtacatgtacattt |
242 |
Q |
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||||||||||| || ||||| || ||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
32949940 |
gtttatgttacgtaccggcacattgtcgccggggttgtaatgtttccttttgcgtactttctggagaggtacatgtacattt |
32950021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 32893226 - 32893416
Alignment:
| Q |
61 |
agagttcaagccacacctggtcatggttttagcccaagttggctatacctttttatattttatctctgaatcttccttcaatcatggaatgagtccttat |
160 |
Q |
| |
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|||||| |||||||||||| ||||||| || ||||||| || ||||||||| |||||||||| ||||| |||| |||||||||||| ||||||||||| |
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| T |
32893226 |
agagttgaagccacacctgctcatggtcttgacccaagtgggttatacctttggatattttatcactgaaacttcattcaatcatggactgagtccttat |
32893325 |
T |
|
| Q |
161 |
gtttatgttacctatcggcatgttctcgccggggctgtgatgtttccttttgcatactttcttgagaggtacatgtacatttctcttcaaa |
251 |
Q |
| |
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||||||||||| |||||| |||| | || |||| ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
32893326 |
gtttatgttacatatcggaatgtcgtggctggggttgtgatgttcccttttgcatactttctagagaggtacatgcatatttctcttcaaa |
32893416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 19505343 - 19505133
Alignment:
| Q |
22 |
tatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggctatacctttttatatttt |
121 |
Q |
| |
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||||||| ||||| |||||| | ||||| |||||||||| |||||||||||||||| |||||||| || | ||| | ||||||||||| ||||||||| |
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| T |
19505343 |
tatggagcaaaaaatattttgttgtctacttgtatacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttatatttt |
19505244 |
T |
|
| Q |
122 |
atctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgccggggctgtgatgtttccttttgcatactttc |
221 |
Q |
| |
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||| ||||| |||| || ||||||||||||||||||||||| |||||||||||||| |||||| | || ||| ||||||| | |||||||||||||||| |
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| T |
19505243 |
atcactgaagcttcttttaatcatggaatgagtccttatgtgtatgttacctatcgccatgttgtagctgggtttgtgatgctcccttttgcatactttc |
19505144 |
T |
|
| Q |
222 |
ttgagaggtac |
232 |
Q |
| |
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| |||| |||| |
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| T |
19505143 |
tagagaagtac |
19505133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 32883533 - 32883594
Alignment:
| Q |
282 |
gagtatcctccacgtgcgcaactgcaaaactaatccctcgagtcttgtgggatccaaatggg |
343 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
32883533 |
gagtatcatccacgtgcgcaatagcaaaactaatccctcgagtcttgtggggtccaaatggg |
32883594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 31113461 - 31113428
Alignment:
| Q |
310 |
actaatccctcgagtcttgtgggatccaaatggg |
343 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
31113461 |
actaatccctcgagtattgtgggatccaaatggg |
31113428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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