View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_low_3 (Length: 349)
Name: NF4328_low_3
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 333
Target Start/End: Original strand, 12289320 - 12289638
Alignment:
| Q |
12 |
aaaggaaaatcggttttggagcactgcacgacaaaagttcaagttggagatgccatgacaaaatcatcgaagattgaaacatttgaaagactaagaatag |
111 |
Q |
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| T |
12289320 |
aaaggaaaatcggttttggagcactgtacgacaaaagttcaagttggagatgccatgacaaaatcatcgaagattgaaatatttgaaagactaagaa--g |
12289417 |
T |
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| Q |
112 |
catgatgtgattggtagaaacaaacatgaattaaggaaaggtgttagaagttagttaattcttgttgtgaaattagttatgaaagttcgatagaaaagta |
211 |
Q |
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| T |
12289418 |
catgatgtgattggtagaaacaaacatgaattaaggaaaggtgttagaagttagttaattcatgttgtgaaattagttatgaaagttcgatagaaaaata |
12289517 |
T |
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| Q |
212 |
gttataagagataacttgtatctcaagtaatataggctataaatagtttatctcgtttgtattaatgactttcgcaaaaataatatacaagtttactttc |
311 |
Q |
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| T |
12289518 |
gttataagagataacttgtatctcaagtaatataggctataaatagtttatctcgtttgtattaatgactttcgc-aaaataatataaaagtttactttc |
12289616 |
T |
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| Q |
312 |
tcagcattactaacctgaattt |
333 |
Q |
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| T |
12289617 |
tcaacattactaacctgaattt |
12289638 |
T |
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