View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_low_5 (Length: 271)
Name: NF4328_low_5
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 62 - 266
Target Start/End: Original strand, 2926430 - 2926634
Alignment:
| Q |
62 |
tcaatagtttgtaagaaatcatgctcattttcatgttacaacactaatttgttcaaaaacttctattgagattaaattttgtggctatccttaactgatg |
161 |
Q |
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|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926430 |
tcaatattttgtaagaaatcatgctcactttcatgatacaacactaatttgttcaaatacttctattgagattaaattttgtggctatccttaactgatg |
2926529 |
T |
|
| Q |
162 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatcct |
261 |
Q |
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| T |
2926530 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatcct |
2926629 |
T |
|
| Q |
262 |
tgaag |
266 |
Q |
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||||| |
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| T |
2926630 |
tgaag |
2926634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 2921028 - 2921227
Alignment:
| Q |
64 |
aatagtttgtaagaaatcatgctcattttcatgttacaacactaatttgttcaaaaacttctattgagattaaattttgtggctatccttaactgatgcc |
163 |
Q |
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|||| |||||||||||||| ||||| ||||||| || || |||||||||||||| |||||||||||| |||| |||| ||| | || ||||| ||| || |
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| T |
2921028 |
aatattttgtaagaaatcaagctcactttcatgata--acgctaatttgttcaaatacttctattgaggttaatttttttggttgtcgttaaccgatacc |
2921125 |
T |
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| Q |
164 |
atgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatccttg |
263 |
Q |
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| T |
2921126 |
atgattataaaccaaattt-tttagcaaagtgaggtttcattatatttaacgaaaaagt--attatttcaagaataactttagcctagtagacattcttg |
2921222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2920700 - 2920764
Alignment:
| Q |
1 |
tctattttatctgaacttatctaactttcagttgtaataaatatatttatgttgtatgttttcaa |
65 |
Q |
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| T |
2920700 |
tctattttatctgaacttatctaaatttcagttgtaataaatatattcatgttgtatgttttcaa |
2920764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 2921811 - 2921916
Alignment:
| Q |
139 |
tttgtggctatccttaactgatgccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaat |
238 |
Q |
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||||||| | ||||||| |||| |||||| |||||| |||| ||||||| ||||||||| |||||||| |||||| ||||||||||| |||| ||||||| |
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| T |
2921811 |
tttgtggttgtccttaaatgataccatgaatataaatcaaaattctttaccaaagtgagatttcattacatttcatgaaaaagttgagtattacaagaat |
2921910 |
T |
|
| Q |
239 |
aacttt |
244 |
Q |
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||||| |
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| T |
2921911 |
cacttt |
2921916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 2927331 - 2927399
Alignment:
| Q |
162 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatt |
230 |
Q |
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|||||| ||||||||||| ||||||| ||||||||| |||||||| |||||| |||||||||||||||| |
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| T |
2927331 |
ccatgaatataaaccaaaattctttaccaaagtgagatttcattacatttcatgaaaaagttgattatt |
2927399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 2926101 - 2926144
Alignment:
| Q |
7 |
ttatctgaacttatctaactttcagttgtaataaatatatttat |
50 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
2926101 |
ttatctaaacttatctaaatttcagttgtaataaatatatttat |
2926144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31346633 - 31346590
Alignment:
| Q |
1 |
tctattttatctgaacttatctaactttcagttgtaataaatat |
44 |
Q |
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||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
31346633 |
tctattttatccgaacttatctaaatttcagttgtaatatatat |
31346590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31357275 - 31357232
Alignment:
| Q |
1 |
tctattttatctgaacttatctaactttcagttgtaataaatat |
44 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||| |||| |
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| T |
31357275 |
tctattttatccgaacttatctaaatttcagttgtaatatatat |
31357232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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