View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4328_low_9 (Length: 236)
Name: NF4328_low_9
Description: NF4328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4328_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 2920675 - 2920456
Alignment:
| Q |
4 |
tattatacaagggataatttgacc-ttcagactaacaaacagataaaaaggacatgcagacacactaccaacatgaaattttgtttgtaatcagaaattc |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920675 |
tattatacaagggataatttgaccgttcagactaacaaacagataaaaaggacatgcagacacactaccaacatgaaattttgtttgtaatcagaaattc |
2920576 |
T |
|
| Q |
103 |
cataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgaga |
202 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2920575 |
cagaagctatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgaga |
2920476 |
T |
|
| Q |
203 |
tatcagcatccgcatcaaat |
222 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2920475 |
tatcagcatccgcatcaaat |
2920456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 2926060 - 2925841
Alignment:
| Q |
4 |
tattatacaagggataatttgacc-ttcagactaacaaacagataaaaaggacatgcagacacactaccaacatgaaattttgtttgtaatcagaaattc |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2926060 |
tattatacaagggataatttgaccgttcagactaacaaacagataaaaaggacatgcagacacactaccaacaagaaattttgtttgtaatcagaaattc |
2925961 |
T |
|
| Q |
103 |
cataagctatcattggctgcaagtccagtagaacctggtgacaaatcttgatacccagaccacctttgagacatgtcatttccatataccacagatgaga |
202 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2925960 |
cagaagctatcattggctgcaagtccagtagaagctggtgacaaatcttgatacccagaccacctttgaaacatgtcatttccatataccacagatgaga |
2925861 |
T |
|
| Q |
203 |
tatcagcatccgcatcaaat |
222 |
Q |
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|||||||||||||||||||| |
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| T |
2925860 |
tatcagcatccgcatcaaat |
2925841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 31346685 - 31346843
Alignment:
| Q |
54 |
acatgcagacacactaccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatcttga |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| ||| ||||| |||||| |
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| T |
31346685 |
acatgcagacacactaccaacatgaaattttgtttgtaatcagaaattcttcaagctatcattgaccacatgtccagtagaagctgatgacagttcttga |
31346784 |
T |
|
| Q |
154 |
tacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagcatc |
212 |
Q |
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| |||| ||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
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| T |
31346785 |
ttcccaaaccacctttgaagcatgccatttccatataccacagatgagatatcatcatc |
31346843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 31357355 - 31357515
Alignment:
| Q |
54 |
acatgcagacacacta--ccaacatgaaattttgtttgtaatcagaaattccataagctatcattggctgcaagtccagtagaacctggtgacaaatctt |
151 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| |||||||||| |||| |
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| T |
31357355 |
acatgcagacacactataccagcatgaaattttgtttgtaatcagaaattccacaagctatcattgaccacatgtccagtagaagctggtgacaattctt |
31357454 |
T |
|
| Q |
152 |
gatacccagaccacctttgagacatgtcatttccatataccacagatgagatatcagcatc |
212 |
Q |
| |
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||| | | ||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31357455 |
gattctctgacaacttttgaaacatgccatttccatataccacagatgagatatcagcatc |
31357515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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