View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-13 (Length: 230)
Name: NF4329-Insertion-13
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 33647178 - 33646960
Alignment:
| Q |
7 |
atcaaaccagtttgacaaggttttctattcgagccgttgcacatgacttttgttttattcactcttagtttatcttcttctctattattacaatacagaa |
106 |
Q |
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| T |
33647178 |
atcaaaccagtttgacaaggttttctattcgaaccgttgcacatgacttttgttttat-cactcttagtttatcttcttctctattattacaatacagaa |
33647080 |
T |
|
| Q |
107 |
tctgcaaattcaaaagagaaaatagtgttttaatatgatactaaaccagagagatttctacatatttaaagcatagaaaactttctttaaaagatttcag |
206 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647079 |
tctgcaaaatcaaaagagaaaat-gtgttttaatatgatactaaaccagagagatttctacatatttaaagcatagaaaactttctttaaaagatttcag |
33646981 |
T |
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| Q |
207 |
tttaatcaacaataaacagaa |
227 |
Q |
| |
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||||||||||||||||||||| |
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| T |
33646980 |
tttaatcaacaataaacagaa |
33646960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 25817719 - 25817510
Alignment:
| Q |
6 |
aatcaaaccagtttgacaaggttttctattcgagccgttgcacatgacttttgttttattcactcttagtttatcttcttctctattattacaatacaga |
105 |
Q |
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|||||||| | ||||||||||||||| ||||| | ||| ||||||||||| |||||| || | || ||| ||||| |||||||||||| |||||| |
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| T |
25817719 |
aatcaaactaatttgacaaggttttccattcgcactgttacacatgactttgattttat-cagttttt-tttgtcttcctctctattatta---tacaga |
25817625 |
T |
|
| Q |
106 |
atctgcaaattcaaaagagaaaatagtgttttaatatgatactaaaccagagagatttctacatatttaaagcatagaaaactttctttaaaagatttca |
205 |
Q |
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|| |||||| ||||||||||||| ||||||||||||||||| |||||||||||| || ||||||| | |||||||||||| | || ||||||||||||| |
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| T |
25817624 |
atttgcaaaatcaaaagagaaaac-gtgttttaatatgataccaaaccagagagaattttacatatat-aagcatagaaaattctc-ttaaaagatttca |
25817528 |
T |
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| Q |
206 |
gtttaatcaacaataaac |
223 |
Q |
| |
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||||| |||||||||||| |
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| T |
25817527 |
gtttattcaacaataaac |
25817510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 25811914 - 25811787
Alignment:
| Q |
99 |
atacagaatctgcaaattcaaaagagaaaatagtgttttaatatgatactaaaccagagagatttctacatatttaaagcatagaaaactttctttaaaa |
198 |
Q |
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|||||||||||||||| ||||||||||||| || |||||||||||| |||||| ||||||| ||||||||||||||||||||||||| || | |||||| |
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| T |
25811914 |
atacagaatctgcaaaatcaaaagagaaaac-gttttttaatatgatgctaaacaagagagaattctacatatttaaagcatagaaaa-ttcccttaaaa |
25811817 |
T |
|
| Q |
199 |
gatttcagtttaa-tcaacaataaacagaa |
227 |
Q |
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|||||||||||| | |||||||||||||| |
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| T |
25811816 |
aatttcagtttaattaaacaataaacagaa |
25811787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 25811998 - 25811938
Alignment:
| Q |
6 |
aatcaaaccagtttgacaaggttttctattcgagccgttgcacatgac-ttttgttttatt |
65 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||| |
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| T |
25811998 |
aatcaaaccagtttgacaaggttttctattcgcaccgttgaacatgactttttattttatt |
25811938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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