View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-15 (Length: 170)
Name: NF4329-Insertion-15
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-15 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 5e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 5e-42
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 14720218 - 14720112
Alignment:
| Q |
11 |
cttctggctaagaatgaacatatgacatgcaacgatattggtattcgaaacttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatg |
110 |
Q |
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| T |
14720218 |
cttctgactaagaatgaacatatgacatccaacgatattggtattccaatcttcttgtatcatcctatgacaatcctcatgatgtgtgcacatatgcatg |
14720119 |
T |
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| Q |
111 |
aatttga |
117 |
Q |
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| T |
14720118 |
aatttga |
14720112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 28187687 - 28187837
Alignment:
| Q |
12 |
ttctggctaagaatgaacatatgacatgcaacgatattggtattcgaaacttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatga |
111 |
Q |
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| T |
28187687 |
ttctggctaagaatgaatatatgacagccaacaatatttgtgttccagacttcttgtatcaccctgtgacaatctttatgatgggtccacaattgcatga |
28187786 |
T |
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| Q |
112 |
atttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaata |
162 |
Q |
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| T |
28187787 |
atttaaattgggaagtaaaactatgagtagaattatcaaattcaagtaata |
28187837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 7572539 - 7572391
Alignment:
| Q |
12 |
ttctggctaagaatgaacatatgacatgcaacgatattggtattcgaaacttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatga |
111 |
Q |
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| T |
7572539 |
ttctggcaaagaatgaacatatgacaaccaacaatgtttgtgttccagacttcttgtatcaccctgcgacaatctttatggtgggtccacatttgcataa |
7572440 |
T |
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| Q |
112 |
atttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaa |
160 |
Q |
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| T |
7572439 |
atttaaattgggaagcaaaactatgagaagaattatcaaattcaagtaa |
7572391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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