View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-16 (Length: 195)
Name: NF4329-Insertion-16
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-16 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 2328639 - 2328830
Alignment:
| Q |
4 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
103 |
Q |
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| T |
2328639 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
2328738 |
T |
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| Q |
104 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgt |
195 |
Q |
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| T |
2328739 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgt |
2328830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 14264909 - 14264766
Alignment:
| Q |
4 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
103 |
Q |
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| T |
14264909 |
agaatgccaaaagagagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagttccaatggattttctaactcgcgctctcaat |
14264810 |
T |
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| Q |
104 |
cttgcgcgttttatggatgtagtttacaaagatgaagataacta |
147 |
Q |
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| T |
14264809 |
ttttcgcgttttatggatgtgttttacacagataaagataacta |
14264766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 25834873 - 25835054
Alignment:
| Q |
4 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
103 |
Q |
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| T |
25834873 |
agaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgccttttcttattcgtgctctcaat |
25834972 |
T |
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| Q |
104 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaag |
185 |
Q |
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| T |
25834973 |
ttttcgcgttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaaatatgtcaaag |
25835054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 31201610 - 31201728
Alignment:
| Q |
28 |
tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt |
127 |
Q |
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| T |
31201610 |
tgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgttttatggatgtcgtt |
31201709 |
T |
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| Q |
128 |
tacaaagatgaagataact |
146 |
Q |
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| T |
31201710 |
tataaagataaagataact |
31201728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 20622002 - 20621854
Alignment:
| Q |
24 |
caattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgt |
123 |
Q |
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| T |
20622002 |
caattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgccttttatgacttgtgttcttaacctttcgcgttttatggatgt |
20621903 |
T |
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| Q |
124 |
agtttacaaagatgaagataactacacacgttctgaaggactaatgaag |
172 |
Q |
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| T |
20621902 |
tgtttacaaaaacgaagataactacacagattctaacagactaatgaag |
20621854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 20603013 - 20602852
Alignment:
| Q |
24 |
caattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgt |
123 |
Q |
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| T |
20603013 |
caattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgccttttatgatttgtgttctcaatctttcgcgttttatggatgt |
20602914 |
T |
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| Q |
124 |
agtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaag |
185 |
Q |
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| T |
20602913 |
tatttacaaaaacaaagataactacacggattctaacggactaatgaagacatttattaaag |
20602852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 17183207 - 17183366
Alignment:
| Q |
28 |
tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt |
127 |
Q |
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| T |
17183207 |
tgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgctttttctaactcgcattgtcaatctctcgcgttttatggatgtaatt |
17183306 |
T |
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| Q |
128 |
tacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagct |
187 |
Q |
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|| || ||||||| |||||||| | |||| ||||| ||||||| |||| || |||||| |
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| T |
17183307 |
tataagcatgaagacaactacacgcattctaaaggagaaatgaagacatacattaaagct |
17183366 |
T |
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