View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329-Insertion-2 (Length: 259)

Name: NF4329-Insertion-2
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329-Insertion-2
NF4329-Insertion-2
[»] chr7 (28 HSPs)
chr7 (50-259)||(46287241-46287450)
chr7 (54-162)||(7258429-7258540)
chr7 (54-162)||(44333291-44333402)
chr7 (54-150)||(48647301-48647400)
chr7 (54-150)||(7509310-7509410)
chr7 (71-145)||(24934968-24935045)
chr7 (70-255)||(46286584-46286772)
chr7 (54-150)||(48788530-48788629)
chr7 (55-150)||(44334309-44334407)
chr7 (83-152)||(6680402-6680472)
chr7 (69-150)||(35728959-35729043)
chr7 (54-162)||(10898931-10899042)
chr7 (83-162)||(35727852-35727932)
chr7 (54-150)||(45584355-45584453)
chr7 (88-145)||(8375497-8375555)
chr7 (55-148)||(10894511-10894606)
chr7 (60-145)||(43461581-43461669)
chr7 (55-143)||(39708302-39708393)
chr7 (54-162)||(42477534-42477645)
chr7 (96-181)||(24287635-24287721)
chr7 (69-146)||(30924882-30924962)
chr7 (54-162)||(48777411-48777522)
chr7 (70-255)||(12223553-12223741)
chr7 (54-146)||(42478128-42478223)
chr7 (54-149)||(48646216-48646313)
chr7 (217-259)||(32793248-32793290)
chr7 (217-255)||(48788676-48788714)
chr7 (69-150)||(7259558-7259641)
[»] chr8 (15 HSPs)
chr8 (87-255)||(45476243-45476412)
chr8 (68-255)||(45476415-45476605)
chr8 (54-150)||(32898303-32898402)
chr8 (69-152)||(1952843-1952929)
chr8 (62-162)||(10406360-10406463)
chr8 (120-207)||(33314987-33315075)
chr8 (54-150)||(35177560-35177659)
chr8 (54-152)||(35178663-35178764)
chr8 (62-126)||(28619398-28619464)
chr8 (62-145)||(30134757-30134843)
chr8 (83-150)||(10407473-10407541)
chr8 (217-256)||(5965446-5965485)
chr8 (4-45)||(45476522-45476563)
chr8 (194-259)||(28619066-28619131)
chr8 (82-145)||(41122630-41122694)
[»] chr5 (24 HSPs)
chr5 (54-162)||(2464823-2464934)
chr5 (54-162)||(25590584-25590695)
chr5 (54-162)||(40611414-40611525)
chr5 (54-153)||(32640451-32640553)
chr5 (52-162)||(8074604-8074717)
chr5 (54-162)||(2466631-2466742)
chr5 (54-150)||(40612517-40612616)
chr5 (54-162)||(28590970-28591082)
chr5 (54-152)||(14889933-14890034)
chr5 (69-150)||(545909-545993)
chr5 (54-162)||(544802-544913)
chr5 (69-145)||(9537213-9537292)
chr5 (62-150)||(14891013-14891104)
chr5 (185-256)||(546008-546079)
chr5 (84-153)||(4593023-4593093)
chr5 (54-152)||(28589863-28589964)
chr5 (54-150)||(8075691-8075790)
chr5 (69-162)||(4593974-4594070)
chr5 (130-207)||(32555463-32555540)
chr5 (64-153)||(32641595-32641686)
chr5 (95-150)||(37072744-37072800)
chr5 (68-162)||(18004812-18004909)
chr5 (222-255)||(18004719-18004752)
chr5 (61-153)||(34173443-34173538)
[»] chr3 (21 HSPs)
chr3 (50-153)||(53958954-53959060)
chr3 (54-150)||(36280175-36280274)
chr3 (54-162)||(48573139-48573250)
chr3 (54-162)||(55389327-55389438)
chr3 (54-153)||(55388222-55388324)
chr3 (54-162)||(48574317-48574428)
chr3 (54-150)||(48809513-48809612)
chr3 (69-162)||(48808526-48808622)
chr3 (54-162)||(17700673-17700784)
chr3 (62-151)||(53957838-53957930)
chr3 (69-162)||(36279106-36279202)
chr3 (82-150)||(47117960-47118028)
chr3 (185-255)||(53959072-53959142)
chr3 (70-150)||(45599050-45599133)
chr3 (217-253)||(49261541-49261577)
chr3 (54-126)||(17701787-17701861)
chr3 (96-150)||(19114679-19114734)
chr3 (70-145)||(47075245-47075323)
chr3 (69-147)||(52318190-52318271)
chr3 (93-126)||(49261071-49261104)
chr3 (54-150)||(19115025-19115124)
[»] chr2 (26 HSPs)
chr2 (54-152)||(24459312-24459413)
chr2 (96-207)||(34037555-34037667)
chr2 (69-162)||(14704159-14704255)
chr2 (54-152)||(32765101-32765202)
chr2 (54-152)||(40000193-40000294)
chr2 (55-148)||(2911346-2911442)
chr2 (70-255)||(17466683-17466870)
chr2 (54-162)||(24458214-24458325)
chr2 (54-162)||(31091385-31091496)
chr2 (54-162)||(39015159-39015270)
chr2 (68-207)||(7412221-7412363)
chr2 (72-207)||(21733627-21733765)
chr2 (69-150)||(39016256-39016340)
chr2 (130-209)||(14887415-14887494)
chr2 (83-256)||(33163327-33163501)
chr2 (96-150)||(12396171-12396226)
chr2 (72-151)||(21732280-21732362)
chr2 (54-153)||(31090320-31090422)
chr2 (185-253)||(39016355-39016423)
chr2 (83-145)||(43380758-43380821)
chr2 (67-145)||(11985861-11985944)
chr2 (217-255)||(31091531-31091569)
chr2 (82-162)||(17330107-17330188)
chr2 (226-255)||(17330243-17330272)
chr2 (55-132)||(5914871-5914950)
chr2 (217-249)||(26586299-26586331)
[»] chr1 (21 HSPs)
chr1 (96-241)||(8975254-8975400)
chr1 (54-150)||(52439627-52439726)
chr1 (54-162)||(52440418-52440529)
chr1 (69-153)||(9339809-9339896)
chr1 (62-162)||(9340891-9340994)
chr1 (62-153)||(6613833-6613927)
chr1 (54-152)||(32664667-32664767)
chr1 (54-179)||(6612567-6612695)
chr1 (87-146)||(7945447-7945507)
chr1 (69-145)||(16249834-16249913)
chr1 (63-255)||(22857426-22857621)
chr1 (71-145)||(25038072-25038149)
chr1 (71-145)||(25043284-25043361)
chr1 (69-150)||(32665642-32665727)
chr1 (54-128)||(51453577-51453653)
chr1 (96-132)||(5782579-5782615)
chr1 (69-149)||(7944322-7944405)
chr1 (217-256)||(32665774-32665813)
chr1 (69-152)||(34088322-34088408)
chr1 (217-255)||(10333190-10333228)
chr1 (68-145)||(39726539-39726618)
[»] chr4 (10 HSPs)
chr4 (61-152)||(47878349-47878443)
chr4 (69-162)||(42278203-42278299)
chr4 (82-153)||(26685332-26685404)
chr4 (69-153)||(47874726-47874813)
chr4 (155-209)||(26170767-26170821)
chr4 (54-151)||(54574590-54574690)
chr4 (171-254)||(39869002-39869085)
chr4 (54-150)||(4701949-4702048)
chr4 (82-145)||(26172808-26172872)
chr4 (98-145)||(48739944-48739992)
[»] scaffold0767 (2 HSPs)
scaffold0767 (62-145)||(5788-5874)
scaffold0767 (217-255)||(5680-5718)
[»] scaffold0237 (1 HSPs)
scaffold0237 (217-249)||(3033-3065)
[»] chr6 (2 HSPs)
chr6 (217-249)||(29856831-29856863)
chr6 (54-111)||(31239825-31239884)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 46287241 - 46287450
Alignment:
Q  50 ttaagatttaagatttaaggatttagggatttgattcaatttaggaatattgatttttggtttagggattaaagtgactatttctactttcactttggtc 149  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  46287241 ttaagatttgagatttaaggatttagggatttgattcaatttaggaatattgatttttgatttagggactaaagtgactatttctactttcactttggtc 46287340  T
Q  150 cctggggcacctcctaatccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgca 249  Q
    |||||| ||||| ||||||||||||||||||||||||||  |||||||||| ||||||||       ||||||| |||||||||||||||||||||||||    
T  46287341 cctgggacaccttctaatccttgtcagcataacacatgcaccatatcatcatttaacaaatttttttaacgccaaagactaaagtgataacggaaatgca 46287440  T
Q  250 gagtcaatga 259  Q
    |||| |||||    
T  46287441 gagttaatga 46287450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 7258540 - 7258429
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  7258540 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtcc 7258441  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  7258440 ctgtgacacctc 7258429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 44333402 - 44333291
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||| |||||  |||||||| | ||||||||||||| |||||||    
T  44333402 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgaccattttctactttcacgttggtcc 44333303  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  44333302 ctgtgacacctc 44333291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 48647301 - 48647400
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| |||| ||||||||||  ||||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  48647301 gatttaagatttagggatatagggatttggtattcaatttgggcatattgatttttggttcagggacgaaagtgaccattttctactttcactttggtcc 48647400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 7509310 - 7509410
Alignment:
Q  54 gatttaagatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta--tttctactttcactttggtc 149  Q
    ||||| ||||||| || |||||||||||||  |||||||| || ||||||||||||||||||||||  ||||||||||  |||||||||||||||| |||    
T  7509310 gatttgagatttaggggtttagggatttgagattcaatttggggatattgatttttggtttagggaccaaagtgactatttttctactttcactttagtc 7509409  T
Q  150 c 150  Q
    |    
T  7509410 c 7509410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 24935045 - 24934968
Alignment:
Q  71 tttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||    
T  24935045 tttagggatttgagattcaatttaggaatattgattttcggtttagggatcaaagtgaccattttctactttcacttt 24934968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 46286772 - 46286584
Alignment:
Q  70 atttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctcctaa 166  Q
    ||||||||||||||  || ||||| ||||||||||||||||||| | |||| |||||||||| |||||||||||| |||||||  ||   ||| || ||     
T  46286772 atttagggatttgaaatttaatttgggaatattgatttttggttcaaggatcaaagtgactattttctactttcattttggtcaatgtaacacatcatac 46286673  T
Q  167 tccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    | ||||| || |||| | ||||| ||||||||||||||||| |       ||||  ||||| |||||||||||| ||| ||||||||||    
T  46286672 ttcttgtgagtataagatatgcgccatatcatcacttaacatatttttttaacggtagagattaaagtgataacagaagtgcagagtca 46286584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 48788530 - 48788629
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||| |||||||  |||||||  |||||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  48788530 gatttgagatttaagaatttaggaatttgatattcaatttgtgaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtcc 48788629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 44334309 - 44334407
Alignment:
Q  55 atttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    |||||||| || | ||||||||||||||||  ||||||| || |||||||||||||||| | |||  |||||||||| |||||||||||||||||||||    
T  44334309 atttaagaatttaagatttagggatttgatattcaatttggggatattgatttttggttcatggaccaaagtgactattttctactttcactttggtcc 44334407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 6680402 - 6680472
Alignment:
Q  83 attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccct 152  Q
    ||||||||| || |||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  6680402 attcaatttggggatattgatttttggtttagggactaaaatgactattttctactttcactttagtccct 6680472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 35728959 - 35729043
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| ||  ||||||| ||||||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  35728959 gatttagggatttaatattcaatttgggaatattgatttttggttcagggaccaaagtgaccactttctactttcactttggtcc 35729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 10898931 - 10899042
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| |||| |||| ||||||| |||||||  ||||||| ||||||||||||||||||| | |||  |||||||| | ||||||||||| |||||||||    
T  10898931 gatttgagatgtaagaatttaggaatttgatattcaatttgggaatattgatttttggttcaaggaccaaagtgaccattttctactttctctttggtcc 10899030  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  10899031 ctgtgacacctc 10899042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 35727932 - 35727852
Alignment:
Q  83 attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    ||||||||| ||||||||||||||||||| | |||| |||||||| | |||||||| ||||||||||||||| | ||||||    
T  35727932 attcaatttgggaatattgatttttggttaaaggatcaaagtgaccattttctactatcactttggtccctgtgacacctc 35727852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 45584355 - 45584453
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||  ||||||||| |||||||||| |||||||| |||||  |||||||| | ||||||| |||||||||||||    
T  45584355 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattga-ttttggttcagggaccaaagtgaccattttctacattcactttggtcc 45584453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 8375497 - 8375555
Alignment:
Q  88 atttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    ||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  8375497 atttagggatattgatttttggtttagggactaaagtgaccattttctactttcacttt 8375555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 10894606 - 10894511
Alignment:
Q  55 atttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggt 148  Q
    |||||||||||  |||||||||||||||  ||||||||| || ||| |||||||||||  ||||| ||||||||| | |||||||||||||||||||    
T  10894606 atttaagattttcggatttagggatttgatattcaatttggggata-tgatttttggtccagggactaaagtgaccattttctactttcactttggt 10894511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 43461581 - 43461669
Alignment:
Q  60 agatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||  |||||||||||||||  ||||||| ||| |||||||||||||||| |||||| |||||||| | ||| ||||||||||||    
T  43461581 agatttagtgatttagggatttgagattcaattgagggatattgatttttggttcagggatcaaagtgaccattttttactttcacttt 43461669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 39708393 - 39708302
Alignment:
Q  55 atttaagatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcact 143  Q
    |||||||| || | |||||||||||||||  ||||||||  |||||||||||||||||||||||   |||||||| | ||||||||||||||    
T  39708393 atttaagaatttaagatttagggatttgaaattcaatttgagaatattgatttttggtttagggtccaaagtgaccattttctactttcact 39708302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 42477645 - 42477534
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||| |||||||  ||||| | ||||||||  ||||||||| |||||  |||||||  |||| ||||||||||||||||||    
T  42477645 gatttgagatttaagtatttaggaatttgatattcaatatgggaatattagtttttggttcagggaccaaagtgatcattttctactttcactttggtcc 42477546  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  42477545 ctgtgacacctc 42477534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 24287721 - 24287635
Alignment:
Q  96 atattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggcacctcctaatccttgtcagcataa 181  Q
    ||||| |||||||||| ||||| ||||| ||| |||| ||||||||||||| ||||||| | |||||| || |||||||| ||||||    
T  24287721 atattcatttttggttcagggactaaagcgaccattttctactttcactttagtccctgtgacacctcatactccttgtcggcataa 24287635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 30924882 - 30924962
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttg 146  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| |  ||| |||||||| | |||||||||||||||||    
T  30924882 gatttagggatttgatattcaatttggggatattgatttttggttcatagatcaaagtgaccattttctactttcactttg 30924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 48777522 - 48777411
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaa-tttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtc 149  Q
    ||||||| ||||| |||||||||||||||  |||||| ||| || ||||||| |||||||| ||| || |||||||| | |||||| |||||||||||||    
T  48777522 gatttaaaatttagggatttagggatttgaaattcaattttggggatattga-ttttggttcaggaatcaaagtgaccattttctattttcactttggtc 48777424  T
Q  150 cctggggcacctc 162  Q
    |||| | ||||||    
T  48777423 cctgtgacacctc 48777411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 12223553 - 12223741
Alignment:
Q  70 atttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctcctaa 166  Q
    ||||||||||||||  |||||||| || |||||||||||||||| | |||| |||||||| | ||| |||||||||||| || |||| | || ||| ||     
T  12223553 atttagggatttgagattcaatttggggatattgatttttggttcaaggatcaaagtgacaattttttactttcactttagttcctgtgacaactcatat 12223652  T
Q  167 tccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
      | ||||| | ||| || || |||| |||||||||||||| |       |||  ||| ||||||||| ||||||||| ||||||||||    
T  12223653 gtcatgtcatcgtaaaacctgtgtcacatcatcacttaacagaattatttaacatcagtgactaaagtaataacggaactgcagagtca 12223741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 42478128 - 42478223
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttg 146  Q
    ||||||||||||| || ||||||||||||  ||||||||  || |||||||||||| ||| | |||  |||||||| | |||||||||||||||||    
T  42478128 gatttaagatttatgggtttagggatttgatattcaattaggggatattgattttttgttcatggaccaaagtgaccattttctactttcactttg 42478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 48646313 - 48646216
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtc 149  Q
    ||||| ||||||| ||||||||| |||||||  ||||||||| |||||| |||||||||| | |||  |||||||| | ||| ||||||||||||||||    
T  48646313 gatttgagatttagggatttaggaatttgatattcaatttagaaatattaatttttggttcaagga-caaagtgaccattttttactttcactttggtc 48646216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 32793290 - 32793248
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtcaatga 259  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  32793290 aacgccaaagactaaagtgataaccgaaatgcagaatcaatga 32793248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 48788676 - 48788714
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  48788676 aacgtcagagactaaagtgataacggaagtgcagagtca 48788714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 7259558 - 7259641
Alignment:
Q  69 gatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||||  ||||||||| || ||||| |||||||||| |||||  |||||||| | |||||| ||||||||||||||    
T  7259558 gatttagggatttgatattcaatttggggatattaatttttggttcagggaccaaagtgaccattttcta-tttcactttggtcc 7259641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 45476412 - 45476243
Alignment:
Q  87 aatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggcacctcctaatccttgtcagcataacaca 185  Q
    ||||||||||||||||||||||||| |||||  |||||||| |||| ||||||||||||||||| ||| | |||||| ||||||| ||||||||||||||    
T  45476412 aatttaggaatattgatttttggttcagggaccaaagtgacaattttctactttcactttggtctctgtgacacctcttaatcctcgtcagcataacaca 45476313  T
Q  186 tgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    |||| || |||||||||||||| |       ||||  |||||||||||||||||| ||| ||||||||||    
T  45476312 tgcgccacatcatcacttaacagatttttttaacgggagagactaaagtgataacagaagtgcagagtca 45476243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 255
Target Start/End: Original strand, 45476415 - 45476605
Alignment:
Q  68 ggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctcct 164  Q
    |||||||| |||||||  || ||||| ||||||||||||||||||| ||||| ||||||||| | |||||||||| |||||||||| |  | ||| || |    
T  45476415 ggatttagagatttgagatttaatttgggaatattgatttttggttcagggactaaagtgaccattttctacttttactttggtccatatgacacatcat 45476514  T
Q  165 aatccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    | | ||||||||||||| ||||||| || |||||||||||||| |       |||| ||||||||||||||||||  ||| ||||||||||    
T  45476515 acttcttgtcagcataagacatgcgccacatcatcacttaacatatttttttaacgacagagactaaagtgataagagaagtgcagagtca 45476605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 32898303 - 32898402
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||| ||||| |||||||||||||||  |||||||||  | |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  32898303 gatttaaaatttagggatttagggatttgatattcaatttgaggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtcc 32898402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 1952843 - 1952929
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccct 152  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||||    
T  1952843 gatttagggatttgatattcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccct 1952929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 10406463 - 10406360
Alignment:
Q  62 atttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggca 158  Q
    ||||| ||||||||| |||||||  ||||||| | ||||||||||||||||| || ||  |||||||||| |||||||| ||||||||||||||| | ||    
T  10406463 atttagggatttaggaatttgatattcaatttggaaatattgatttttggttcagagaccaaagtgactattttctactatcactttggtccctgtgaca 10406364  T
Q  159 cctc 162  Q
    ||||    
T  10406363 cctc 10406360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 33315075 - 33314987
Alignment:
Q  120 aaagtgactattt-ctactttcactttggtccctggggcacctcctaatccttgtcagcataacacatgcgtcatatcatcacttaaca 207  Q
    ||||||||||||| |||||||||||||||||| || | |||||| || |||||||||||| || ||||| ||||  |||||||||||||    
T  33315075 aaagtgactattttctactttcactttggtccatgtgacacctcatactccttgtcagcaaaaaacatgtgtcacttcatcacttaaca 33314987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 35177659 - 35177560
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| | |||||||||||||  ||||||||| || ||| |||||||||||| |||||  ||||| || | |||||||||||||||||||||    
T  35177659 gatttaagatttaggaatttagggatttgatattcaatttggggatactgatttttggttcagggaccaaagtaaccattttctactttcactttggtcc 35177560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 35178663 - 35178764
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtga-ctatttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||| | |||||||  ||||||| ||||||||||||||||||| ||||   ||||||| |  |||||| ||||||||||||||    
T  35178663 gattttagatttaaggatttaagaatttgatattcaatttgggaatattgatttttggttcaggggccaaagtgatcattttctagtttcactttggtcc 35178762  T
Q  151 ct 152  Q
    ||    
T  35178763 ct 35178764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 28619398 - 28619464
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtga 126  Q
    ||||| ||||||||||||||||  |||||||| || |||||||||||||||| | ||||||||||||    
T  28619398 atttagggatttagggatttgaaattcaatttggggatattgatttttggttcatggattaaagtga 28619464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 30134843 - 30134757
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    ||||||||||||| ||||||||  ||||||||  |||||||||||||||||| | |||  |||||||| | ||||||||||||||||    
T  30134843 atttaaggatttaaggatttgaaattcaatttgtgaatattgatttttggttaaaggaccaaagtgacaattttctactttcacttt 30134757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 10407473 - 10407541
Alignment:
Q  83 attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||| || |||||||||||||||| || || |||||| || | |||||||||||||||||||||    
T  10407473 attcaatttgggcatattgatttttggttcagagactaaagtaaccattttctactttcactttggtcc 10407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 5965446 - 5965485
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtcaa 256  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  5965446 aacgtcagagactaaagtgataacggaagtgcagagtcaa 5965485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 45476563 - 45476522
Alignment:
Q  4 aaaatatgttaagtgatgatgtgacgtatgtcttatactgac 45  Q
    ||||||||||||||||||||||| || ||||||||| |||||    
T  45476563 aaaatatgttaagtgatgatgtggcgcatgtcttatgctgac 45476522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 28619131 - 28619066
Alignment:
Q  194 atcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtcaatga 259  Q
    ||||||||||||||||       |||| | |||||||||||||||||| || ||||||||||||||    
T  28619131 atcatcacttaacaaaattatttaacggccgagactaaagtgataacgaaagtgcagagtcaatga 28619066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 41122630 - 41122694
Alignment:
Q  82 gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||| |  |||||||||||||||| |||||| |||||||| | |||||| |||||||||    
T  41122630 gattcaatttggagatattgatttttggttcagggatcaaagtgacgattttctattttcacttt 41122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 2464934 - 2464823
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    |||||||||||||||||||||||||||||  ||||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  2464934 gatttaagatttaaggatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtcc 2464835  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  2464834 ctgtgacacctc 2464823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 25590695 - 25590584
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||| || ||  |||||||| | |||||||||||||||||||||    
T  25590695 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcagagaccaaagtgaccattttctactttcactttggtcc 25590596  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  25590595 ctgtgacacctc 25590584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 40611525 - 40611414
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||| |||||   ||||||| | |||||||||||||||||||||    
T  40611525 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcagggacccaagtgaccattttctactttcactttggtcc 40611426  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  40611425 ctgtgacacctc 40611414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 32640553 - 32640451
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||| | |||  |||||||| | |||||||||||||||||||||    
T  32640553 gatttgagatttaaggatttaggaatttgatattcaattttggaatattgatttttggttcaaggaccaaagtgaccattttctactttcactttggtcc 32640454  T
Q  151 ctg 153  Q
    |||    
T  32640453 ctg 32640451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 8074717 - 8074604
Alignment:
Q  52 aagatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggt 148  Q
    ||||||||||||||| |||||| ||||||||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||    
T  8074717 aagatttaagatttagggatttggggatttgatattcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctactttcactttggt 8074618  T
Q  149 ccctggggcacctc 162  Q
     |||| | ||||||    
T  8074617 acctgtgacacctc 8074604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 2466631 - 2466742
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||| ||||||||||||||| | |||||||  ||||||| |||||||||| |||||||| |||||  ||| ||||||||| ||||||||||||||||||    
T  2466631 gatttgagatttaaggatttaagaatttgatattcaatttgggaatattgaattttggttcagggaccaaaatgactattttctactttcactttggtcc 2466730  T
Q  151 ctggggcacctc 162  Q
     |||| ||||||    
T  2466731 atgggacacctc 2466742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 40612517 - 40612616
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| |||||||||||||||  ||||||||| || |||||||||||||||| |||||  ||||| || | |||||||||||||||||||||    
T  40612517 gatttaagatttagggatttagggatttgttattcaatttgggcatattgatttttggttcagggaccaaagtaaccattttctactttcactttggtcc 40612616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 28590970 - 28591082
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgattttt-ggtttagggattaaagtgactattt-ctactttcactttggtc 149  Q
    ||||| ||||||||||||||| | |||||||  ||||||| ||||||||||||||| |||| |||||  |||||||| |||| |||||||||||||||||    
T  28590970 gatttgagatttaaggatttaagaatttgatattcaatttgggaatattgattttttggttcagggaccaaagtgaccattttctactttcactttggtc 28591069  T
Q  150 cctggggcacctc 162  Q
    |||| | ||||||    
T  28591070 cctgtgacacctc 28591082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 14890034 - 14889933
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| |||||||| || |||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||| ||||||||||    
T  14890034 gatttaagatttagggatttagcgaattgatattcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctacttttactttggtcc 14889935  T
Q  151 ct 152  Q
    ||    
T  14889934 ct 14889933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 545909 - 545993
Alignment:
Q  69 gatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||||  ||||||||| || |||||||||||||||| | |||  |||||||||| |||||||||||||||||||||    
T  545909 gatttagggatttgttattcaatttgggcatattgatttttggttcaaggaccaaagtgactattttctactttcactttggtcc 545993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 544913 - 544802
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||| ||||||||| |||||||  ||||||| ||||||||||||||||||| ||| |   || |||||| ||||||||||||||||| |||    
T  544913 gatttgagatttagggatttaggaatttgatattcaatttgggaatattgatttttggttcaggaacccaaatgactattttctactttcactttgatcc 544814  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  544813 ctgtgacacctc 544802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 9537292 - 9537213
Alignment:
Q  69 gatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||||  |||||||| || ||||||||||||| || |||||| |||||||||| ||||||||||||||||    
T  9537292 gatttagggatttgagattcaatttggggatattgatttttgattcagggatcaaagtgactattttctactttcacttt 9537213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 14891013 - 14891104
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||  |||||||| |||||||||||||||| || ||||| ||||||||| | |||||||| ||||||||||||    
T  14891013 atttagggatttaggaatttgaaattcaatttgggaatattgatttttgattcagggactaaagtgaccattttctactatcactttggtcc 14891104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 546008 - 546079
Alignment:
Q  185 atgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtcaa 256  Q
    |||||||||||||||||||||||||       |||| ||| ||||||||||||||||||| |||||||||||    
T  546008 atgcgtcatatcatcacttaacaaatttttttaacgtcagggactaaagtgataacggaagtgcagagtcaa 546079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 4593093 - 4593023
Alignment:
Q  84 ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctg 153  Q
    |||||||| || |||||||||||||||| |||||  |||||||| | ||||||||||||||||||||||||    
T  4593093 ttcaatttgggcatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctg 4593023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 28589964 - 28589863
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    |||||||| ||||  ||||||| ||||||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||| ||||||||||    
T  28589964 gatttaaggtttagagatttagtgatttgatattcaattttggtatattgatttttggttcagggaccaaagtgaccattttctacttttactttggtcc 28589865  T
Q  151 ct 152  Q
    ||    
T  28589864 ct 28589863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 8075691 - 8075790
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtga-ctatttctactttcactttggtcc 150  Q
    ||||| ||||||| |||| |||| |||||||  ||||||| ||||||||||||||||||| |||||  ||||||| |  |||| ||||||||||||||||    
T  8075691 gatttgagatttagggatataggaatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgatcattttcgactttcactttggtcc 8075790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 4593974 - 4594070
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    |||||||| |||||||  ||||||| ||||||||||||||||||| | ||| ||   |||| | |||||||||||||||||||||||| | ||||||    
T  4593974 gatttaggaatttgatattcaatttgggaatattgatttttggttcatggactacgatgaccattttctactttcactttggtccctgtgacacctc 4594070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 32555463 - 32555540
Alignment:
Q  130 tttctactttcactttggtccctggggcacctcctaatccttgtcagcataacacatgcgtcatatcatcacttaaca 207  Q
    |||||||||||||||| |||| || | |||||| || ||||||||||||||| || |  |||||||||||| ||||||    
T  32555463 tttctactttcactttagtccatgtgacacctcatactccttgtcagcataaaacctttgtcatatcatcaattaaca 32555540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 32641595 - 32641686
Alignment:
Q  64 ttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctg 153  Q
    |||||||||||||||||| ||  ||||||| || |||||||||||||||| |||||| ||||| || | ||| |||||||| |||||||||||    
T  32641595 ttaaggatttagggatttcatattcaatttggggatattgatttttggttgagggatcaaagtaaccattttttactttca-tttggtccctg 32641686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 37072800 - 37072744
Alignment:
Q  95 aatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    |||||||||||| |||| ||||| ||||||||||| |||||||||||| ||||||||    
T  37072800 aatattgattttcggttcagggactaaagtgactattttctactttcattttggtcc 37072744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 18004909 - 18004812
Alignment:
Q  68 ggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    |||||||||||||||||  ||||||| || ||||||| ||||| || |||||  |||||||||| |||||||||||| ||| ||| ||| | ||||||    
T  18004909 ggatttagggatttgatattcaatttggggatattgaattttgattcagggaccaaagtgactattttctactttcattttagtctctgtgacacctc 18004812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 18004752 - 18004719
Alignment:
Q  222 cagagactaaagtgataacggaaatgcagagtca 255  Q
    ||||||||||||||||||||||| ||||||||||    
T  18004752 cagagactaaagtgataacggaagtgcagagtca 18004719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 34173538 - 34173443
Alignment:
Q  61 gatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtga-ctatttctactttcactttggtccctg 153  Q
    |||||| |||||||| |||||||  |||||||| || |||||||||||||||| || ||  ||||||| |  |||||||||||| ||| |||||||    
T  34173538 gatttagggatttagtgatttgaaattcaatttggggatattgatttttggttcagagaccaaagtgatcattttctactttcagtttagtccctg 34173443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 53958954 - 53959060
Alignment:
Q  50 ttaagatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttg 146  Q
    ||||||||| ||||||||||||||||| |||||  ||||||||| ||||||||||||||||||| ||||   |||||||| | |||||||||||||||||    
T  53958954 ttaagatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggttcaggggccaaagtgacaattttctactttcactttg 53959053  T
Q  147 gtccctg 153  Q
    |||||||    
T  53959054 gtccctg 53959060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 36280175 - 36280274
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||    
T  36280175 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttggtttagggactaaagtgaccattttcttctttcattttggtcc 36280274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 48573250 - 48573139
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||| |||||||  ||||||| ||||||||||||||||||| | |||| |||||||| | |||||||||||||||||||||    
T  48573250 gatttgagatttaagaatttaggaatttgatattcaattttggaatattgatttttggttcatggatcaaagtgaccattttctactttcactttggtcc 48573151  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  48573150 ctgtgacacctc 48573139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 55389327 - 55389438
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| |||||||||||||| |||| |||||  |||||||| | |||||||||||||||||||||    
T  55389327 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgattttcggttcagggaccaaagtgaccattttctactttcactttggtcc 55389426  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  55389427 ctgtgacacctc 55389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 55388324 - 55388222
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| | |||||||||||||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  55388324 gatttaagatttaggaatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtcc 55388225  T
Q  151 ctg 153  Q
    |||    
T  55388224 ctg 55388222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 48574317 - 48574428
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||||||||||| |||||||| ||||||||  ||||||| || ||||||| |||||||| | ||| ||||||||| |||| ||||||||||||||||||    
T  48574317 gatttaagatttagggatttagagatttgatattcaatttggggatattgaattttggttcaaggactaaagtgaccattttctactttcactttggtcc 48574416  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  48574417 ctgtgacacctc 48574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 48809513 - 48809612
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||| |||||||  ||||||||||||||||||||||||||| | |||| |||||||| | |||||||||||||||| ||||    
T  48809513 gatttgagatttaagtatttaggaatttgatattcaatttaggaatattgatttttggttcatggatcaaagtgaccattttctactttcactttagtcc 48809612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 48808622 - 48808526
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| |||||  |||||||| | |||||||||||||||||||| ||| | ||||||    
T  48808622 gatttagggatttgatattcaatttgggaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtctctgtgacacctc 48808526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 17700784 - 17700673
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||| ||||||||| ||||||| |||||||  ||||||| ||| ||||||||||| ||| |||||  |||||||| |||| ||||||||||||||||||    
T  17700784 gatttgagatttaagaatttaggaatttgatattcaattttggattattgattttttgttcagggaccaaagtgaccattttctactttcactttggtcc 17700685  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  17700684 ctgtgacacctc 17700673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 53957930 - 53957838
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccc 151  Q
    ||||||||||||||||||||||  |||||||| || |||||||||||||||| | ||| |||||| |  |||| |||||||||||||||||||    
T  53957930 atttaaggatttagggatttgacattcaatttggggatattgatttttggttcatggactaaagtaatcattttctactttcactttggtccc 53957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 36279202 - 36279106
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggcacctc 162  Q
    ||||||||||||||||  ||||||| || |||||  ||||||||| |||||  |||||||| |||| ||||||||||||||||||||| | ||||||    
T  36279202 gatttagggatttgatattcaatttggggatatttttttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctc 36279106  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 47117960 - 47118028
Alignment:
Q  82 gattcaatttaggaatattgatttttggtttagggattaaagtgactatttctactttcactttggtcc 150  Q
    ||||||| || || |||||||||||||||| ||||| ||||||||| ||||||| ||||||||| ||||    
T  47117960 gattcaagttggggatattgatttttggttcagggactaaagtgaccatttctattttcactttagtcc 47118028  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 53959072 - 53959142
Alignment:
Q  185 atgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    ||||| || ||||||||||||||||       |||| ||||||||||||||||||||||| ||||||||||    
T  53959072 atgcgccacatcatcacttaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtca 53959142  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 45599133 - 45599050
Alignment:
Q  70 atttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||| ||| | ||||||||| | |||||||||||| ||| ||||    
T  45599133 atttagggatttgagtttcaagttaagaatattgatttttggttcaggaactaaagtgaccattttctactttcattttagtcc 45599050  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 49261541 - 49261577
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagt 253  Q
    |||| ||||||||||||||||||||||||||||||||    
T  49261541 aacgtcagagactaaagtgataacggaaatgcagagt 49261577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 17701787 - 17701861
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtga 126  Q
    ||||||||||||| | |||| ||||||||||  ||||||| |||||||||||||||| || |||||  |||||||    
T  17701787 gatttaagatttaggaattttgggatttgatattcaatttgggaatattgatttttgcttcagggaccaaagtga 17701861  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 19114734 - 19114679
Alignment:
Q  96 atattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| || ||||||||||||||| | |||||||||||||||| ||||    
T  19114734 atattgatttttgattcagggattaaagtgaccattttctactttcactttagtcc 19114679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 47075245 - 47075323
Alignment:
Q  70 atttagggattt--gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    ||||||||||||  ||||||| || || |||||||||||||||| ||||| ||||||||| | |||||||||| |||||    
T  47075245 atttagggatttaagattcaagttggggatattgatttttggttcagggactaaagtgacaattttctactttaacttt 47075323  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 52318190 - 52318271
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttgg 147  Q
    ||||||||||||||||  ||||||| || |||||| ||||||||| | |||  |||||||| |||| |||||||||||||||    
T  52318190 gatttagggatttgatattcaatttggggatattgttttttggttcatggaccaaagtgaccattttctactttcactttgg 52318271  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 49261104 - 49261071
Alignment:
Q  93 ggaatattgatttttggtttagggattaaagtga 126  Q
    ||||||||||||||||||||||| ||||||||||    
T  49261104 ggaatattgatttttggtttaggaattaaagtga 49261071  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 19115025 - 19115124
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| |||||||||||||| ||||| ||  |||||| || || |||||||||||| ||| | ||| |||||||  || |||||||||||||||| ||||    
T  19115025 gatttgagatttaaggatttggggatatgatattcaaattggggatattgatttttagttcatggactaaagtggttattttctactttcactttagtcc 19115124  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 24459312 - 24459413
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||| | |||||||  ||||||| ||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||    
T  24459312 gatttcagatttaaggatttacgaatttgatattcaatttgggaatattgatttttggttcagggatcaaagtgaccattttctactttcactttggtcc 24459411  T
Q  151 ct 152  Q
    ||    
T  24459412 ct 24459413  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 34037555 - 34037667
Alignment:
Q  96 atattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggcacctcctaatccttgtcagcataacacatgcgtcata 194  Q
    |||||||||||||||| ||| || ||||||||||||| ||||| ||||||| |||  || | |||||| || ||||||||||||||| ||||| |||| |    
T  34037555 atattgatttttggttcaggaatcaaagtgactattttctactgtcactttagtctgtgtgacacctcatactccttgtcagcataaaacatgtgtcaca 34037654  T
Q  195 tcatcacttaaca 207  Q
    |||||||||||||    
T  34037655 tcatcacttaaca 34037667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 14704255 - 14704159
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| | |||  |||||||||| |||||||||||||||||||||||| | ||||||    
T  14704255 gatttagggatttgatattcaatttggggatattgatttttggttcatggaccaaagtgactattttctactttcactttggtccctgtgacacctc 14704159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 32765202 - 32765101
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||| ||||| |||||||||||||||||  ||||||| || |||||||||||||||| |||||  |||| ||| | |||||||||||||||| ||||    
T  32765202 gatttaaaatttagggatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagcgaccattttctactttcactttagtcc 32765103  T
Q  151 ct 152  Q
    ||    
T  32765102 ct 32765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 40000193 - 40000294
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtga-ctatttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||  |||||||  ||||||| ||||||||||||||||||| | |||  ||||||| |  |||||||||||||||||||||    
T  40000193 gatttgagatttaaggatttagaaatttgatattcaatttgggaatattgatttttggttcaaggaccaaagtgatcattttctactttcactttggtcc 40000292  T
Q  151 ct 152  Q
    ||    
T  40000293 ct 40000294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 2911346 - 2911442
Alignment:
Q  55 atttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggt 148  Q
    |||| ||||||||||||||||| |||||  ||||||||| | ||||||||||||||||| || ||  |||||||| | |||||||||||||||||||    
T  2911346 atttgagatttaaggatttaggaatttgatattcaatttggaaatattgatttttggttaagagaccaaagtgacaattttctactttcactttggt 2911442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 17466683 - 17466870
Alignment:
Q  70 atttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactatttct-actttcactttggtccctggggcacctcctaa 166  Q
    ||||||||||||||  || |||||||| ||||| |||||||||| |||||| ||| |||| |||| | ||||||||||| || | || | |||||| ||     
T  17466683 atttagggatttgaaatttaatttagggatattaatttttggtt-agggatcaaattgaccattttttactttcactttagtgcgtgtgacacctcatat 17466781  T
Q  167 tccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
     |||||||| | ||| ||||| |||| |||||||||||||| |       |||| |  |||||||||||||||||||| ||||||||||    
T  17466782 gccttgtcatcctaaaacatgtgtcacatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtca 17466870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 24458325 - 24458214
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||||| ||||| |||||||||||| ||||  |||||||  | ||||||||||||| || |||||  |||||||| |||| ||||||||||||||||||    
T  24458325 gatttaaaatttagggatttagggatctgatattcaatttgaggatattgatttttgattgagggaccaaagtgaccattttctactttcactttggtcc 24458226  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  24458225 ctgtgacacctc 24458214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 31091385 - 31091496
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||  ||||||| | ||||||||||||||||||| |  ||  |||||||| | ||||||||||||||||||||     
T  31091385 gatttgagatttaaggatttaggaatttgatattcaatctcggaatattgatttttggttcaaagaccaaagtgaccattttctactttcactttggtct 31091484  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  31091485 ctgtgacacctc 31091496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 39015270 - 39015159
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||| ||||||| |||||| || |||||||  ||||||| ||||||||||||||||||| | |||  ||| |||| |||| ||||||||||||||||||    
T  39015270 gatttgagatttagggattttggaatttgatattcaatttgggaatattgatttttggttcaaggaccaaactgaccattttctactttcactttggtcc 39015171  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  39015170 ctgtgacacctc 39015159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 7412363 - 7412221
Alignment:
Q  68 ggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctcct 164  Q
    ||||||||||||||||  ||||||||||| |||||| ||||||||| |||||  |||||||| | |||||| ||||||||| |||| || | ||| || |    
T  7412363 ggatttagggatttgagattcaatttagggatattgttttttggttgagggaacaaagtgaccattttctattttcactttagtccttgtgacacatcat 7412264  T
Q  165 aatccttgtcagcataacacatgcgtcatatcatcacttaaca 207  Q
    |  || ||||| | ||| ||||| ||||| |||||||||||||    
T  7412263 atgccatgtcatcgtaaaacatgtgtcatgtcatcacttaaca 7412221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 21733627 - 21733765
Alignment:
Q  72 ttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactatttct-actttcactttggtccctggggcacctcctaatc 168  Q
    ||||||||||||  |||||||| |||||||||||||| |||| || ||  |||||||| |||| | ||||||||||| |||   | | ||| || || ||    
T  21733627 ttagggatttgagattcaatttgggaatattgattttcggttcagagaccaaagtgaccattttttactttcactttagtcatcgtgacacttcatactc 21733726  T
Q  169 cttgtcagcataacacatgcgtcatatcatcacttaaca 207  Q
    ||||||||||||| ||||| |||| ||||||||||||||    
T  21733727 cttgtcagcataaaacatgtgtcacatcatcacttaaca 21733765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 39016256 - 39016340
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||| ||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||||||||||||||||||    
T  39016256 gatttagggatttcatattcaatttgggcatattgatttttggttcagggaccaaagtgacaattttctactttcactttggtcc 39016340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 14887415 - 14887494
Alignment:
Q  130 tttctactttcactttggtccctggggcacctcctaatccttgtcagcataacacatgcgtcatatcatcacttaacaaa 209  Q
    |||||||||||||||| ||||||| | |||||| || ||||||| ||||||| ||||  |||| ||||||| ||||||||    
T  14887415 tttctactttcactttagtccctgtgacacctcatactccttgttagcataaaacatttgtcacatcatcagttaacaaa 14887494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 256
Target Start/End: Original strand, 33163327 - 33163501
Alignment:
Q  83 attcaatttaggaatattgatttttggtttagggattaaagtgac-tatttctactttcactttggtccctggggcacctcctaatccttgtcagcataa 181  Q
    ||||||||| || |||||||||||||||| |||||  |||   || | |||||||||| |||||||| |||| | |||||  ||  || |||||   |||    
T  33163327 attcaatttggggatattgatttttggttcagggaccaaaacaacatttttctactttgactttggtgcctgtgacaccttatatgccatgtcattctaa 33163426  T
Q  182 cacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtcaa 256  Q
     ||||| ||||  ||||||||| |||||       |||| |||||||||||||||||||||||||||| ||||||    
T  33163427 aacatgtgtcacttcatcacttcacaaaattaatcaacgtcagagactaaagtgataacggaaatgcatagtcaa 33163501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 12396226 - 12396171
Alignment:
Q  96 atattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||| ||| ||||    
T  12396226 atattgatttttggtttagtgactaaagtgactattttctactttcattttagtcc 12396171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 21732362 - 21732280
Alignment:
Q  72 ttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccc 151  Q
    ||||||||||||  |||||||| || ||||| |||||||||| |||||  |||||||| |||| ||||||||||||| |||||    
T  21732362 ttagggatttgagattcaatttggggatattaatttttggttcagggaccaaagtgaccattttctactttcactttagtccc 21732280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 31090422 - 31090320
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    |||||||  |||| ||||||| |||||||||  ||||||| || ||||| |||||||||| |||||  |||| | | |||| ||||||||||||||||||    
T  31090422 gatttaaattttagggatttaaggatttgatattcaatttggggatattaatttttggttcagggaccaaagcggccattttctactttcactttggtcc 31090323  T
Q  151 ctg 153  Q
    |||    
T  31090322 ctg 31090320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 39016355 - 39016423
Alignment:
Q  185 atgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagt 253  Q
    |||||| |||||||||||||||| |       |||| ||||||||||||||||||||||| ||||||||    
T  39016355 atgcgtaatatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagt 39016423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 43380821 - 43380758
Alignment:
Q  83 attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    ||||||||| || |||||||||||||||| |||||  |||||||| | ||||||||||||||||    
T  43380821 attcaatttggggatattgatttttggttcagggaccaaagtgaccattttctactttcacttt 43380758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 11985944 - 11985861
Alignment:
Q  67 aggatttagggattt----gattcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcacttt 145  Q
    |||||||||||||||    |||||||||| | |||||| ||||| |||| |||||| ||||||||| ||| |||||||||||||    
T  11985944 aggatttagggatttttgagattcaatttggaaatattaattttcggttcagggatcaaagtgacttttttctactttcacttt 11985861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 31091531 - 31091569
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  31091531 aacgtcagagactaaagtgataacggaagtgcagagtca 31091569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 17330107 - 17330188
Alignment:
Q  82 gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    ||||||||||||| ||||||||||| |||| |||||  |||||||| | ||| |||||||||||| ||| ||| | ||||||    
T  17330107 gattcaatttagggatattgattttgggttcagggaccaaagtgaccattttttactttcactttagtctctgtgacacctc 17330188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 17330243 - 17330272
Alignment:
Q  226 gactaaagtgataacggaaatgcagagtca 255  Q
    ||||||||||||||||||||||||||||||    
T  17330243 gactaaagtgataacggaaatgcagagtca 17330272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 5914871 - 5914950
Alignment:
Q  55 atttaagatttaaggatttagggattt--gattcaatttaggaatattgatttttggtttagggattaaagtgactattt 132  Q
    |||| ||||||| |||||||| |||||  |||||||  | || |||||||||||||||| ||||| ||||||||| ||||    
T  5914871 atttgagatttagggatttagagattttagattcaagctggggatattgatttttggttcagggactaaagtgacaattt 5914950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 26586299 - 26586331
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgca 249  Q
    |||||||||||||||||||||||||||| ||||    
T  26586299 aacgccagagactaaagtgataacggaagtgca 26586331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 8975400 - 8975254
Alignment:
Q  96 atattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggcacctcctaatccttgtcagcataacacatgcgtcata 194  Q
    ||||||||||||||||| ||||  |||||||| |||| ||||||||||||| ||||||| | || ||| || |||||||| |||||| ||||  ||||||    
T  8975400 atattgatttttggtttcgggaccaaagtgaccattttctactttcactttagtccctgtgacatctcatactccttgtcggcataaaacatttgtcata 8975301  T
Q  195 tcatcacttaacaaannnnnnnaacgccagagactaaagtgataacg 241  Q
    |||||| ||||||||       ||||||| |||||||||||||||||    
T  8975300 tcatcaattaacaaaattatttaacgccaaagactaaagtgataacg 8975254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 52439726 - 52439627
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||||| ||||| ||||||||| |||||||  |||||||  | ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  52439726 gatttaaaatttagggatttaggaatttgatattcaatttgaggatattgatttttggtttagggatcaaagtgaccattttctactttcactttggtcc 52439627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 52440418 - 52440529
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||||  ||||||| |||||| | |||||||||| |||||  |||||||||| |||||||||||||||||| ||    
T  52440418 gatttgagatttaaggatttaggaatttgatattcaatttgggaatacttatttttggttcagggaccaaagtgactattttctactttcactttggccc 52440517  T
Q  151 ctggggcacctc 162  Q
    ||| | ||||||    
T  52440518 ctgtgacacctc 52440529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 9339896 - 9339809
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctg 153  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| || ||  |||||||| |||| |||||||||||||||||||||    
T  9339896 gatttagggatttgatattcaatttggggatattgatttttggttcagagaccaaagtgaccattttctactttcactttggtccctg 9339809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 9340891 - 9340994
Alignment:
Q  62 atttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctggggca 158  Q
    ||||| ||||||||| |||||||  ||| ||| |||||||||| |||||||| |||||  |||||||| |||| ||||||||||||||||||||| | ||    
T  9340891 atttagggatttaggaatttgatattcattttgggaatattgaattttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgaca 9340990  T
Q  159 cctc 162  Q
    ||||    
T  9340991 cctc 9340994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 6613833 - 6613927
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtccctg 153  Q
    ||||||||||||||||||||||  |||||||| || |||||||||||||||| |||||  ||||| |  |||| ||||||||||||| |||||||    
T  6613833 atttaaggatttagggatttgagattcaatttggggatattgatttttggttcagggaacaaagtaataatttcctactttcactttagtccctg 6613927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 32664767 - 32664667
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| ||||||||||||||||| |||||  ||||||||| |||||||||||||||| || |  ||  |||||||||| |||||||||||| ||||||||    
T  32664767 gatttgagatttaaggatttaggaatttgatattcaatttgggaatattgatttttgattca-agaccaaagtgactattttctactttcattttggtcc 32664669  T
Q  151 ct 152  Q
    ||    
T  32664668 ct 32664667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 6612695 - 6612567
Alignment:
Q  54 gatttaagatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||| ||||||| | ||||||||||||||  |||||||| || |||||||||||||||| | |||  |||||||  |||| ||||||| | ||| ||||    
T  6612695 gatttgagatttaggaatttagggatttgagattcaatttggggatattgatttttggttcaaggacaaaagtgatcattttctactttgaatttagtcc 6612596  T
Q  151 ctggggcacctcctaatccttgtcagcat 179  Q
    ||| | |||||| || |||||||||||||    
T  6612595 ctgtgacacctcatattccttgtcagcat 6612567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 7945447 - 7945507
Alignment:
Q  87 aatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttg 146  Q
    ||||| |||||||||||||||||||||||||  |||||||| | |||||||||||||||||    
T  7945447 aatttgggaatattgatttttggtttagggaccaaagtgaccattttctactttcactttg 7945507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 16249913 - 16249834
Alignment:
Q  69 gatttagggattt--gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||  ||||||||||||| ||||||||||| |||| ||||| |||| |||| | ||||||||||||||||    
T  16249913 gatttagggatttaagattcaatttagggatattgattttcggttcagggactaaaatgaccattttctactttcacttt 16249834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 255
Target Start/End: Original strand, 22857426 - 22857621
Alignment:
Q  63 tttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcac 159  Q
    |||| ||||||| ||||||||  |||||||| || |||||||||||||||| ||   | |||||||||| |||||||||||||||| |||| || | |||    
T  22857426 tttagggatttaaggatttgagattcaatttgggtatattgatttttggttcagttttcaaagtgactagtttctactttcactttagtccatgtgacac 22857525  T
Q  160 ctcctaatccttgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    ||| ||   | |||||  |||| || || |||| |||||||||||||| |       |||| ||  ||||||||||||||||||| |||| |||||    
T  22857526 ctcatatgtcatgtcattataaaacttgtgtcacatcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaagtca 22857621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 25038149 - 25038072
Alignment:
Q  71 tttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||  ||||||||||| |||||||||||||||| |||||  |||||||  | ||||||||||||||||    
T  25038149 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcacttt 25038072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 25043361 - 25043284
Alignment:
Q  71 tttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||  ||||||||||| |||||||||||||||| |||||  |||||||  | ||||||||||||||||    
T  25043361 tttagggatttgagattcaatttagggatattgatttttggttcagggaccaaagtgataattttctactttcacttt 25043284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 32665642 - 32665727
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttg-gtttagggattaaagtgactattt-ctactttcactttggtcc 150  Q
    ||||||||||||||||  ||||||| || ||||||||||||| ||| |||||  |||||||| |||| ||||||||||||||||||    
T  32665642 gatttagggatttgatattcaatttggggatattgatttttgtgttcagggaccaaagtgaccattttctactttcactttggtcc 32665727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 51453577 - 51453653
Alignment:
Q  54 gatttaagatttaaggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgact 128  Q
    ||||| |||||||||||||||||||||||  |||||||||  | |||||||||| || || |||||| |||||||||    
T  51453577 gatttgagatttaaggatttagggatttgaaattcaatttgcggatattgatttatgattcagggatcaaagtgact 51453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 5782615 - 5782579
Alignment:
Q  96 atattgatttttggtttagggattaaagtgactattt 132  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5782615 atattgatttttggtttagggattaaagtgacaattt 5782579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 7944405 - 7944322
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgactattt-ctactttcactttggtc 149  Q
    ||||||||||||||||  ||||||| || |||||||||||||||  |||||  |||||||  |||| |||||||||||||||||    
T  7944405 gatttagggatttgatattcaatttggggatattgatttttggtccagggaccaaagtgataattttctactttcactttggtc 7944322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 32665774 - 32665813
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtcaa 256  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  32665774 aacgccagggactaaagtgataacggaagtgcagagtcaa 32665813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 34088322 - 34088408
Alignment:
Q  69 gatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgact-atttctactttcactttggtccct 152  Q
    |||||||||||||||  |||||||| || ||||||| |||| ||| |||||  ||||||||  ||||||||||||||||| ||||||    
T  34088322 gatttagggatttgaaattcaatttggggatattgaatttttgttcagggaccaaagtgacacatttctactttcactttagtccct 34088408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 10333190 - 10333228
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  10333190 aacgctagagactaaagtgataacggaagtgcagagtca 10333228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 39726539 - 39726618
Alignment:
Q  68 ggatttagggatttg--attcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||||  ||||||||| |  |||||||||||||||| ||||  |||| |||||| ||||||||||||||||    
T  39726539 ggatttagggatttggaattcaatttggtgatattgatttttggttcaggg-ctaaaatgactattttctactttcacttt 39726618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 47878349 - 47878443
Alignment:
Q  61 gatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccct 152  Q
    |||||||| ||||||| |||||||  ||||||| ||||||||||||||||||| |||||  |||||||| | |||||||||||||||||||||||    
T  47878349 gatttaagaatttaggaatttgatattcaattttggaatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccct 47878443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 42278299 - 42278203
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctggggcacctc 162  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| |||||  |||||||| | |||||| ||||||||||||||||| | ||||||    
T  42278299 gatttagggatttgatattcaatttggggatattgatttttggttcagggaccaaagtgaccattttctagtttcactttggtccctgtgacacctc 42278203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 26685332 - 26685404
Alignment:
Q  82 gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctg 153  Q
    ||||||| ||| |||||||||||||||||| |||||||||| |||||| |||||||||||| ||| |||||||    
T  26685332 gattcaagttatgaatattgatttttggttcagggattaaactgactattttctactttcattttagtccctg 26685404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 47874813 - 47874726
Alignment:
Q  69 gatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtccctg 153  Q
    ||||||||||||||||  ||||||| || |||||||||||||||| | |||  |||||||| | ||| ||||||||||||||||||||    
T  47874813 gatttagggatttgatattcaattttgggatattgatttttggttcaaggaccaaagtgaccattttatactttcactttggtccctg 47874726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 26170821 - 26170767
Alignment:
Q  155 ggcacctcctaatccttgtcagcataacacatgcgtcatatcatcacttaacaaa 209  Q
    |||||||| || ||||||||||||||| ||||| |||| ||||||||||||||||    
T  26170821 ggcacctcatactccttgtcagcataaaacatgtgtcacatcatcacttaacaaa 26170767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 54574690 - 54574590
Alignment:
Q  54 gatttaagatttaaggatttagggatttgat--tcaatttaggaatattgatttttggtttagggattaaagtga-ctatttctactttcactttggtcc 150  Q
    ||||| ||||||||||| ||||| |||||||  |||||||  |||| |||||||||||||  ||||| ||||||| |  ||||||||||||||| |||||    
T  54574690 gatttgagatttaaggagttaggaatttgatattcaatttgagaattttgatttttggttcggggatcaaagtgatcattttctactttcacttcggtcc 54574591  T
Q  151 c 151  Q
    |    
T  54574590 c 54574590  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 39869085 - 39869002
Alignment:
Q  171 tgtcagcataacacatgcgtcatatcatcacttaacaaannnnnnnaacgccagagactaaagtgataacggaaatgcagagtc 254  Q
    ||||| ||||| | ||| |||| |||||||||||||| |       |||| ||||||||||||||||||||||| |||||||||    
T  39869085 tgtcatcataaaatatgtgtcacatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtc 39869002  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 4702048 - 4701949
Alignment:
Q  54 gatttaagatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcactttggtcc 150  Q
    ||||| |||| || |||||||| |||||||  ||||||||  | ||||||| ||||| || |||||  |||||||||| |||||||||||||||| ||||    
T  4702048 gatttgagatctagggatttagagatttgagattcaattttaggatattgacttttgtttcagggaccaaagtgactattttctactttcactttagtcc 4701949  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 26172808 - 26172872
Alignment:
Q  82 gattcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||| |||||||||||||||| || ||| | |||||||| || |||||||| |||||||    
T  26172808 gattcaattttggaatattgatttttgattcaggaactaaagtgattattttctactgtcacttt 26172872  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 48739944 - 48739992
Alignment:
Q  98 attgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    |||||||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  48739944 attgatttttggttcagggactaaagtgactattttttactttcacttt 48739992  T

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Target: scaffold0767 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 5874 - 5788
Alignment:
Q  62 atttaaggatttagggatttga--ttcaatttaggaatattgatttttggtttagggattaaagtgacta-tttctactttcacttt 145  Q
    ||||||||| ||||||||||||  || |||||  | |||||||||||||||| |||||| |||||||| | ||| ||||||||||||    
T  5874 atttaaggaattagggatttgagatttaatttgaggatattgatttttggttcagggatcaaagtgaccactttttactttcacttt 5788  T

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Target: scaffold0767; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 5718 - 5680
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgcagagtca 255  Q
    |||||||||||||||||||||||||||| || |||||||    
T  5718 aacgccagagactaaagtgataacggaagtgtagagtca 5680  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 3065 - 3033
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgca 249  Q
    |||||||||||||||| ||||||||||||||||    
T  3065 aacgccagagactaaactgataacggaaatgca 3033  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 29856863 - 29856831
Alignment:
Q  217 aacgccagagactaaagtgataacggaaatgca 249  Q
    |||||||||||||||| ||||||||||||||||    
T  29856863 aacgccagagactaaactgataacggaaatgca 29856831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 31239825 - 31239884
Alignment:
Q  54 gatttaagatttaaggatttagggatttga--ttcaatttaggaatattgatttttggtt 111  Q
    ||||| ||||||| ||||||| ||||||||  |||||||| || ||||||||||||||||    
T  31239825 gatttgagatttagggatttaaggatttgagattcaatttggggatattgatttttggtt 31239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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