View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-21 (Length: 56)
Name: NF4329-Insertion-21
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-21 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 48; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 25358067 - 25358016
Alignment:
| Q |
5 |
aagctaaaggcaccaaatcctctccctgtcaagttcatatgcaataaacttg |
56 |
Q |
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| T |
25358067 |
aagctaaagacaccaaatcctctccctgtcaagttcatatgcaataaacttg |
25358016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 25391108 - 25391058
Alignment:
| Q |
5 |
aagctaaaggcaccaaatcctctccctgtcaagttcatatgcaataaacttg |
56 |
Q |
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| T |
25391108 |
aagctaaaggcaccaaatcct-tctctgtcaagttcatatgcaataaacttg |
25391058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 25494354 - 25494308
Alignment:
| Q |
10 |
aaaggcaccaaatcctctccctgtcaagttcatatgcaataaacttg |
56 |
Q |
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| T |
25494354 |
aaaggcaccgaatcctctccctgtcaaattcatatgcaataaacttg |
25494308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 25677396 - 25677360
Alignment:
| Q |
20 |
aatcctctccctgtcaagttcatatgcaataaacttg |
56 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
25677396 |
aatcctctccctgtcaaattcatatgcaataaacttg |
25677360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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