View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-30 (Length: 152)
Name: NF4329-Insertion-30
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-30 |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 1e-48; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37531363 - 37531489
Alignment:
| Q |
27 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagatnnnnnnn-gtttagaagttgaagcaattaagtcttatcatttattcaacaata |
125 |
Q |
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| T |
37531363 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagataaaaaaaagtttagaagttgaagcaattaagtcttatcatttattcaacaata |
37531462 |
T |
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| Q |
126 |
aaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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| T |
37531463 |
aaatcttgaaagtaacaaaaaagcaat |
37531489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37592570 - 37592696
Alignment:
| Q |
27 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagatnnnnnnn-gtttagaagttgaagcaattaagtcttatcatttattcaacaata |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37592570 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagataaaaaaaagtttagaagttgaagcaattaagtcttatcatttattcaacaata |
37592669 |
T |
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| Q |
126 |
aaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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| T |
37592670 |
aaatcttgaaagtaacaaaaaagcaat |
37592696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37694929 - 37695055
Alignment:
| Q |
27 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagatnnnnnnn-gtttagaagttgaagcaattaagtcttatcatttattcaacaata |
125 |
Q |
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| T |
37694929 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagataaaaaaaagtttagaagttgaagcaattaagtcttatcatttattcaacaata |
37695028 |
T |
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| Q |
126 |
aaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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| T |
37695029 |
aaatcttgaaagtaacaaaaaagcaat |
37695055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37709858 - 37709987
Alignment:
| Q |
27 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagatnnnnnnn----gtttagaagttgaagcaattaagtcttatcatttattcaaca |
122 |
Q |
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| T |
37709858 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagataaaaaaaaaaagtttagaagttgaagcaattaagtcttatcatttattcaaca |
37709957 |
T |
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| Q |
123 |
ataaaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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| T |
37709958 |
ataaaatcttgaaagtaacaaaaaagcaat |
37709987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37821971 - 37822097
Alignment:
| Q |
27 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagatnnnnnnn-gtttagaagttgaagcaattaagtcttatcatttattcaacaata |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37821971 |
atattttgatatgtgtgaactacctaacaaccaaaagacattgagataaaaaaaagtttagaagttgaagcaattaagtcttatcatttattcaacgata |
37822070 |
T |
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| Q |
126 |
aaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
37822071 |
aaatcctgaaagtaacaaaaaagcaat |
37822097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 37402788 - 37402760
Alignment:
| Q |
5 |
ataatgaggatatgctttcaaaatatttt |
33 |
Q |
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| T |
37402788 |
ataatgaggatatgctttcaaaatatttt |
37402760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 16844759 - 16844692
Alignment:
| Q |
87 |
aagttgaagcaattaagtctt-atcatttattcaacaataaaa-tcttgaaagtaacaaaaaagcaat |
152 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||| |
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| T |
16844759 |
aagttgaagcaattaagtcttgatcatttattcaacaaaaaaaatcttgaaagtaaccaaaaagcaat |
16844692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 14552512 - 14552556
Alignment:
| Q |
108 |
atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaat |
152 |
Q |
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|||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
14552512 |
atcatttattcaacaacaaagtcttgatagtaacaaaaaagcaat |
14552556 |
T |
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