View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-33 (Length: 130)
Name: NF4329-Insertion-33
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-33 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 5e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 5e-63
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 44102446 - 44102575
Alignment:
| Q |
1 |
ggcgctgcttggtaacccctttttctcatttttccctttcaaatcaaattctctctcattttctctccgttattctgaatttgttgtttatgtaatggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44102446 |
ggcgctgcttggtaacccctttttctcattttcccctttcaaatcaaattctctctcattttctctccgttattctgaatttgttgtttatgtaatggtt |
44102545 |
T |
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| Q |
101 |
gaaggggaatttacatcaccggttgtagct |
130 |
Q |
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| T |
44102546 |
gaaggggaatttacatcaccagttgtagct |
44102575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 51218127 - 51218256
Alignment:
| Q |
1 |
ggcgctgcttggtaacccctttttctcatttttccctttcaaatcaaattctctctcattttctctccgttattctgaatttgttgtttatgtaatggtt |
100 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
51218127 |
ggcgctgcttgataacccctttttctcattttcccctttcaaatcaaattctctctcgttttttctccgttattttgaatctgttgtttatgtaatggtt |
51218226 |
T |
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| Q |
101 |
gaaggggaatttacatcaccggttgtagct |
130 |
Q |
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| T |
51218227 |
gaaggggaatttacatcgccggttgtagct |
51218256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2292679 - 2292809
Alignment:
| Q |
1 |
ggcgctgcttggtaacccctttt-tctcatttttccctttcaaatcaaattctctctcattttctctccgttattctgaatttgttgtttatgtaatggt |
99 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||| |||||||| ||| |||||||||||||||||| |
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| T |
2292679 |
ggcgctgcttgataaccccttttttctcattttcccctttcaaatcaaattctgtctcgttttctctcagttattctaaatctgttgtttatgtaatggt |
2292778 |
T |
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| Q |
100 |
tgaaggggaatttacatcaccggttgtagct |
130 |
Q |
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| T |
2292779 |
tgaaggggaatttacatcgccggttgtagct |
2292809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35528891 - 35528947
Alignment:
| Q |
1 |
ggcgctgcttggtaacccctttttc-tcatttttccctttcaaatcaaattctctct |
56 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
35528891 |
ggcgctgcttggtaacccctttttcctcattttcccctttcaaatcaaattctctct |
35528947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 35528956 - 35529012
Alignment:
| Q |
76 |
tgaatttgttgtttatgtaatggt----tgaaggggaatttacatcaccggttgtag |
128 |
Q |
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||||| ||||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
35528956 |
tgaatctgttgtttatgtaattgtcgcttgaaggggaatttacatcaccggtagtag |
35529012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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