View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-38 (Length: 114)
Name: NF4329-Insertion-38
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-38 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14089286 - 14089399
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14089286 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
14089385 |
T |
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| Q |
101 |
gttgttccagctca |
114 |
Q |
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|||||||||||||| |
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| T |
14089386 |
gttgttccagctca |
14089399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33697409 - 33697296
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697409 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
33697310 |
T |
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| Q |
101 |
gttgttccagctca |
114 |
Q |
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|||||||||||||| |
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| T |
33697309 |
gttgttccagctca |
33697296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 6e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-56
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9359027 - 9359140
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9359027 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggttgtcttcacatcta |
9359126 |
T |
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| Q |
101 |
gttgttccagctca |
114 |
Q |
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|||||||||||||| |
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| T |
9359127 |
gttgttccagctca |
9359140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 33810084 - 33810016
Alignment:
| Q |
39 |
aggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttc |
107 |
Q |
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|||||| | |||||| ||||| || |||| ||||||||||||||| ||||| || ||||| |||||||| |
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| T |
33810084 |
aggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttc |
33810016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 33815002 - 33814934
Alignment:
| Q |
39 |
aggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatctagttgttc |
107 |
Q |
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|||||| | |||||| ||||| || |||| ||||||||||||||| ||||| || ||||| |||||||| |
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| T |
33815002 |
aggttgctccatatagatttcttcctctaggtctccatgcaagaatgctgttttaacatcaagttgttc |
33814934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 24878016 - 24878129
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
24878016 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggttatcttcacatcta |
24878115 |
T |
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| Q |
101 |
gttgttccagctca |
114 |
Q |
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|||||||||||||| |
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| T |
24878116 |
gttgttccagctca |
24878129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9952495 - 9952384
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9952495 |
catacctgactctctttaccctcaaccttgtagccctcaggttgatacatatatatttcctcgtctaagtctccatgctagaaggctgtcttcacatcta |
9952396 |
T |
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| Q |
101 |
gttgttccagct |
112 |
Q |
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|||||||||||| |
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| T |
9952395 |
gttgttccagct |
9952384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 46457200 - 46457087
Alignment:
| Q |
1 |
catacctgactctctttaccctcaaccttgtaaccctcaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggctgtcttcacatcta |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46457200 |
catacctgactctctttaccctcaactttgtaacccttaggttgatacatatatatttcctcgtctaagtctccatgcaagaaggttgtcttcacatcta |
46457101 |
T |
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| Q |
101 |
gttgttccagctca |
114 |
Q |
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|||||||||||||| |
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| T |
46457100 |
gttgttccagctca |
46457087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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