View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-42 (Length: 137)
Name: NF4329-Insertion-42
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 32764101 - 32763968
Alignment:
| Q |
4 |
aggttaataatataagattctttctctaatttgtatctatgcttcatcaggacttaaagaaggcaagattactttgaggccaatacatagaagttaaatc |
103 |
Q |
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| T |
32764101 |
aggttaataatataagattctttctctaatttgtatctatgcttcatcaggacttaaagaaggcaagattactttgaggccaatacatagaagttaaatc |
32764002 |
T |
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| Q |
104 |
ttcattttacacaactttctcaggcttttcaggt |
137 |
Q |
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| T |
32764001 |
ttcattttacacaactttctcaggcttttcaggt |
32763968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 17593303 - 17593268
Alignment:
| Q |
97 |
ttaaatcttcattttacacaactttctcaggctttt |
132 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
17593303 |
ttaagtcttcattttacacaactttctcaggctttt |
17593268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 17584503 - 17584471
Alignment:
| Q |
102 |
tcttcattttacacaactttctcaggcttttca |
134 |
Q |
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| T |
17584503 |
tcttcattttacacaactttcgcaggcttttca |
17584471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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