View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-44 (Length: 217)
Name: NF4329-Insertion-44
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-44 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 41909162 - 41909262
Alignment:
| Q |
6 |
ttctaaaacatctgtatcaacaccattagtatttgaaacagatatcctctggtacacgctgctacacttcaacaaagttaagactaaaaaagcatgggta |
105 |
Q |
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| T |
41909162 |
ttctaaaacatctgtatcaacaccattagtatttgaaacagatatcatctggtacacgctgctacacttcaacaaagttaagact-aaaaagcatgggta |
41909260 |
T |
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| Q |
106 |
ac |
107 |
Q |
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|| |
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| T |
41909261 |
ac |
41909262 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 41909323 - 41909373
Alignment:
| Q |
167 |
taaccagctaaaatcccattgagattgggcatttggtgtggcatccatgtg |
217 |
Q |
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| T |
41909323 |
taaccagctaaaatcccattgagattgggcatctggtgtggcatccatgtg |
41909373 |
T |
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