View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329-Insertion-5 (Length: 203)
Name: NF4329-Insertion-5
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329-Insertion-5 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 4298511 - 4298720
Alignment:
| Q |
1 |
ccttcttggtagctttgtacttccgtacgctgattgagaaaggtctaattccactcaaaggtaacaatttctgctatgtaatatatacacatgtg----- |
95 |
Q |
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| T |
4298511 |
ccttcttggtagctttgcactttcgtacgctgattgagaaaggtctaattccacttaaaggtaacaatttctgctatataatatatacacgtgtgtgtgt |
4298610 |
T |
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| Q |
96 |
---tgtgtgaaggaacaaagttacttcacgagtaattctgcttaataactcatcataaaccttgattctcaccaatccaaagtttcttaaaatccagaat |
192 |
Q |
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| T |
4298611 |
gtgtgtgtgaagggatgaagttacttcacgagtaattctgcttaataactcatcataaaccttgattctcaccaatccaaagtttcttaaaatccagaat |
4298710 |
T |
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| Q |
193 |
ttgtagctat |
202 |
Q |
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||| |||||| |
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| T |
4298711 |
ttgcagctat |
4298720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4259207 - 4259261
Alignment:
| Q |
19 |
acttccgtacgctgattgagaaaggtctaattccactcaaaggtaacaatttctg |
73 |
Q |
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| T |
4259207 |
actttcgtacactgtttgaaaaaggtctaataccactcaaaggtaacaatttctg |
4259261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 4627252 - 4627196
Alignment:
| Q |
14 |
tttgtacttccgtacgctgattgagaaaggtctaattccactcaaaggtaacaattt |
70 |
Q |
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| T |
4627252 |
tttgcactttcgtacactgtttgaaaaaggtctaataccactcaaaggtaacaattt |
4627196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 4623389 - 4623354
Alignment:
| Q |
34 |
ttgagaaaggtctaattccactcaaaggtaacaatt |
69 |
Q |
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| T |
4623389 |
ttgagaaaggtctaataccactcaaaggtaacaatt |
4623354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 2496 - 2538
Alignment:
| Q |
30 |
ctgattgagaaaggtctaattccactcaaaggtaacaatttct |
72 |
Q |
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| T |
2496 |
ctgattgacaaaggtctaataccactcaaaggtaacaatttct |
2538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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