View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329-Insertion-8 (Length: 207)

Name: NF4329-Insertion-8
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329-Insertion-8
NF4329-Insertion-8
[»] chr3 (11 HSPs)
chr3 (3-207)||(52847494-52847698)
chr3 (3-207)||(52847326-52847530)
chr3 (3-206)||(52847663-52847866)
chr3 (3-207)||(52848835-52849039)
chr3 (74-207)||(52849003-52849136)
chr3 (3-203)||(52848503-52848703)
chr3 (3-191)||(52848683-52848871)
chr3 (3-203)||(52847834-52848034)
chr3 (3-48)||(52847317-52847362)
chr3 (58-94)||(52848108-52848144)
chr3 (7-203)||(52848167-52848363)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 52847698 - 52847494
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52847698 ttttaatgtcctcaattttttgcttaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 52847599  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52847598 acaacacgtttccgattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 52847499  T
Q  203 tcttg 207  Q
    |||||    
T  52847498 tcttg 52847494  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 52847530 - 52847326
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    ||||||||||||||||||||| |  ||||||||||| | ||||||||||||||  | |||||||||||| ||||||||||||| |||| |||| ||||||    
T  52847530 ttttaatgtcctcaattttttcctgaggagcatcttgatcactatgcccattccatatagatgatttacattctacctgaggaagagatatggtagccat 52847431  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
    |||||| |||||||||||||||||||||||  |||||||||| |||||| || ||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  52847430 acaacaagtttcagattcaaatgagtcattaaatttctctgtgtggtttacatgatggttgttggtccttttaatgtcctcaattttttgctgaggagca 52847331  T
Q  203 tcttg 207  Q
    |||||    
T  52847330 tcttg 52847326  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 52847866 - 52847663
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    |||||| |||||||||||||| |  |||||||| || | ||||||||||||||  | |||||||||||| ||||||||||||  ||||||| | | ||||    
T  52847866 ttttaacgtcctcaatttttttctgaggagcatattgatcactatgcccattccatatagatgatttacattctacctgagggagagacattgcatccat 52847767  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
     ||||| | || |||||||||||| ||| | ||||||||| |  ||||  ||| |||  ||||||| |||||||||||||||||||||| || |||||||    
T  52847766 gcaacatggtttagattcaaatgaatcaatagatttctctttgaggttcacaatatgattgttggtccttttaatgtcctcaattttttgcttaggagca 52847667  T
Q  203 tctt 206  Q
    ||||    
T  52847666 tctt 52847663  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 52849039 - 52848835
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    ||||||||||||||| |||| ||  ||||||||||| | ||||||| |||||| || |||| |||||||  |||||||||||| ||||||||| || |||    
T  52849039 ttttaatgtcctcaacttttcgctgaggagcatcttgatcactatgtccattccctatagaagatttaccatctacctgaggaagagacatggcagtcat 52848940  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
     ||||  | ||||||||||||||| || || |||||   ||    |||  ||||||||   ||||| |||||||| |||||| ||||||  |||||||||    
T  52848939 gcaacggggttcagattcaaatgaatcgttagatttagttgagatgttaacaagatggtctttggtccttttaatatcctcagttttttgttgaggagca 52848840  T
Q  203 tcttg 207  Q
    |||||    
T  52848839 tcttg 52848835  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 207
Target Start/End: Complemental strand, 52849136 - 52849003
Alignment:
Q  74 tctacctgaggaggagacatgggagccatacaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttt 173  Q
    |||||| |||||||||| |||| ||||||||||| || ||  ||||||||||||||||| ||||||||||   ||||  ||||||||    |||  ||||    
T  52849136 tctacccgaggaggagaaatggcagccatacaacgcgatttggattcaaatgagtcattagatttctctgagaggttcacaagatggtcactggaccttt 52849037  T
Q  174 taatgtcctcaattttttcctgaggagcatcttg 207  Q
    |||||||||||| ||||  |||||||||||||||    
T  52849036 taatgtcctcaacttttcgctgaggagcatcttg 52849003  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 52848703 - 52848503
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    ||||||||||||||||||||||   |||| ||| || | ||||||| |||||| |||||||||||||||  ||||||||| ||||||||| |  | ||||    
T  52848703 ttttaatgtcctcaattttttgttgaggaacatattgatcactatgtccattccctgtagatgatttacaatctacctgacgaggagacacgacaaccat 52848604  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
      |||| | ||||  |||  ||| |||||| ||||||||||   ||||  ||||||||  |||||| ||||  |||||||||||||| |  |||||||||    
T  52848603 ggaacatgattcatgttctgatgggtcattagatttctctgggaggttcacaagatggccgttggtcctttcgatgtcctcaattttcttgtgaggagca 52848504  T
Q  203 t 203  Q
    |    
T  52848503 t 52848503  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 52848871 - 52848683
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    ||||||| |||||| |||||||   ||||||||||| | |||||||||||||| ||  | |||| || |  |||||   |||| |||| |||| ||||||    
T  52848871 ttttaatatcctcagttttttgttgaggagcatcttgatcactatgcccattccctacaaatgacttgccatctacaaaaggaagagatatggcagccat 52848772  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaatttttt 191  Q
     ||||| | ||| ||||||||||||||| | ||||||||||   ||||  ||||||||  ||| || ||||||||||||||||||||||    
T  52848771 gcaacagggttccgattcaaatgagtcaatagatttctctgataggttcacaagatggtcgttcgtccttttaatgtcctcaatttttt 52848683  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 52848034 - 52847834
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccat 102  Q
    |||||||||||||||||||| |   |||| |||||| | || ||||| ||| | || |||||||||||| ||||||| ||||| |||||  ||  | |||    
T  52848034 ttttaatgtcctcaatttttagttgaggatcatcttgatcattatgctcatcccctttagatgatttacattctaccagaggatgagacggggctgtcat 52847935  T
Q  103 acaacacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagca 202  Q
     ||| | | ||| |||||| |||||||||| ||||||||||    ||   ||||||||  ||||||  |||||| |||||||||||||| ||||||||||    
T  52847934 gcaaaaggattctgattcatatgagtcattagatttctctgatacgtacacaagatggtggttggtaattttaacgtcctcaatttttttctgaggagca 52847835  T
Q  203 t 203  Q
    |    
T  52847834 t 52847834  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 52847362 - 52847317
Alignment:
Q  3 ttttaatgtcctcaattttttgcgtaggagcatcttcaccactatg 48  Q
    |||||||||||||||||||||||  ||||||||||| | |||||||    
T  52847362 ttttaatgtcctcaattttttgctgaggagcatcttgatcactatg 52847317  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 52848144 - 52848108
Alignment:
Q  58 tgtagatgatttacgttctacctgaggaggagacatg 94  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  52848144 tgtagatgatttaggttctgcctgaggaggagacatg 52848108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 52848363 - 52848167
Alignment:
Q  7 aatgtcctcaattttttgcgtaggagcatcttcaccactatgcccattctctgtagatgatttacgttctacctgaggaggagacatgggagccatacaa 106  Q
    |||||| |||||||||||   |||||||| || | |||||||||| |||  | ||||||| ||| |||| || ||  |||||||||||| | ||||  ||    
T  52848363 aatgtcttcaattttttgacgaggagcattttgatcactatgcccgttcattatagatgagttaggttcgacatgtcgaggagacatggcatccatgaaa 52848264  T
Q  107 cacgtttcagattcaaatgagtcattggatttctctgtatggtttgcaagatggatgttggttcttttaatgtcctcaattttttcctgaggagcat 203  Q
    || | |||| ||| ||| ||||| || ||||||||| |  ||||  ||||| ||   |||||||||| |||||||||  |||||| | |||||||||    
T  52848263 catggttcaaattgaaacgagtctttagatttctctttgaggttcacaagacggtcattggttctttcaatgtcctcggttttttgccgaggagcat 52848167  T

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