View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4329_high_1 (Length: 827)
Name: NF4329_high_1
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 3550730 - 3551144
Alignment:
| Q |
16 |
catcacgccattgattattaagctaaaaaa-cgaagaaattctatatagcttcaaaagagggagagaagagaaagaagaattattc--------ttcatc |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3550730 |
catcacgccattgattattaagataaaaaaacaaagaaattctatatagcttcaaaagagggagagaagagaaagaagaattattcatttattcttcatc |
3550829 |
T |
|
| Q |
107 |
atctattctttcnnnnnnngtacataaaaagatgaatacacaaaatccaaaaggtttgaagcattttgtcatctatggtgtcctccttgtaagaggggtt |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3550830 |
atctattctttctttttttgtacataaaaagatgaatacacaaaatccaaaaggtttgaagcattttgtcatctatggtgtcctccttgtaagaggggtt |
3550929 |
T |
|
| Q |
207 |
tgttgtagtctggaagctacaaaatgtgattcattttatgaattcatgttatttcattgtaacttatgaaaaccagatacaatattcagcctatgatgga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3550930 |
tgttgtagtctggaagctacaaaatgtgattcattttacgaattcatgttatttcattgtaacttatgaaaaccagatacaatattcagcctatgatgga |
3551029 |
T |
|
| Q |
307 |
aggaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccccaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3551030 |
aggaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccccaa |
3551129 |
T |
|
| Q |
407 |
cattatattgttttc |
421 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
3551130 |
cattttattgttttc |
3551144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 210 - 409
Target Start/End: Original strand, 3574007 - 3574211
Alignment:
| Q |
210 |
tgtagtctggaagctacaaaatgtgattcattttatgaattcatgttatttcattgtaacttatgaaaaccagatacaatattcagcctatgatggaagg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||| || ||| | ||||| |||| |||||||| ||||||||| || |
|
|
| T |
3574007 |
tgtagtcgggaagctacaaaatgtgattctttttatgaattcacgttattccattgcaatttaaaataaccaaatac-atattcagactatgatggcagc |
3574105 |
T |
|
| Q |
310 |
aggattaatcctttatgcatacatgtaatcaaacccag------aacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccc |
403 |
Q |
| |
|
|| |||||||||| | |||||||||||||||||| ||| |||| || ||||||||| ||||||||| ||| | ||||||||||||||||||| | |
|
|
| T |
3574106 |
agaattaatccttcaggcatacatgtaatcaaacgcagaaacaaaacaattgatcttgctttaggattttccattctccttctatcctgtgtaatatctc |
3574205 |
T |
|
| Q |
404 |
caacat |
409 |
Q |
| |
|
|||||| |
|
|
| T |
3574206 |
caacat |
3574211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 307 - 426
Target Start/End: Original strand, 3572706 - 3572825
Alignment:
| Q |
307 |
aggaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccccaa |
406 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| ||||||| | ||||||||||| || |
|
|
| T |
3572706 |
aggaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcaattttcctttcaccttctatcttttgtaatatccctaa |
3572805 |
T |
|
| Q |
407 |
cattatattgttttcctcct |
426 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
3572806 |
catcttattcttttcctcct |
3572825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 3570668 - 3570791
Alignment:
| Q |
307 |
aggaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccccaa |
406 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| ||||||| | |||||||||| |||||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
3570668 |
aggaggataagtcctttatgcattcatgtaatcaaaaacagaacaactgatcttgcttttcaattttcatttcaccttctatcttgtgtaatatctccaa |
3570767 |
T |
|
| Q |
407 |
cattatattgttttcctcctccat |
430 |
Q |
| |
|
||| |||| ||||||||| |||| |
|
|
| T |
3570768 |
catcttattcttttcctccgccat |
3570791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 3559945 - 3560035
Alignment:
| Q |
162 |
ttgaagcattttgtcatctatggtgtcctccttgtaagaggggtttgttgtagtctggaagctacaaaatgtgattcattttatgaattca |
252 |
Q |
| |
|
||||||||||||| ||| |||| || |||||||||||||||| | |||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
3559945 |
ttgaagcattttgccatttatgatgccctccttgtaagagggatatgttgtagtcatggagctacaaaatgtgattatttttatgaattca |
3560035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 3558791 - 3558698
Alignment:
| Q |
126 |
gtacataaaaagatgaatacacaaaatccaaaaggtttgaagcattttgtcatct-atggtgtcctccttgtaagaggggtttgttgtagtctgg |
219 |
Q |
| |
|
|||||||||||||| |||| | | |||| ||| |||||||||||||||||||| | ||| ||||| |||||||| | |||||||||||||||||| |
|
|
| T |
3558791 |
gtacataaaaagattaatataaataatcaaaagggtttgaagcattttgtcatttcatgatgtccaccttgtaa-aagggtttgttgtagtctgg |
3558698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 3567933 - 3567875
Alignment:
| Q |
187 |
tcctccttgtaagaggggtttgttgtagtctggaagctacaaaatgtgattcattttat |
245 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
3567933 |
tccttcttgtaagagggttttgttgtagtctggctgctacaaaatgtgattctttttat |
3567875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 1685428 - 1685501
Alignment:
| Q |
357 |
tcttgcttttggattttcctttcactttctatcctgtgtaatatccccaacattatattgttttcctcctccat |
430 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||||||||| ||||||| |||| | ||||| |||||| |
|
|
| T |
1685428 |
tcttgcttttcgattttcctttcaccttctatcttgtgtaatatctccaacatcttattctcttccttctccat |
1685501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 3560051 - 3560171
Alignment:
| Q |
309 |
gaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatccccaaca |
408 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || | | || ||||||||| |||| |||||| || ||||||| |||||| |||| |||||| |
|
|
| T |
3560051 |
gaggattagtcctttatgcatacatgtaatcaaaagca-agcccttgatcttgctttgcgattgtccttttaccttctatcttgtgtagtatctccaaca |
3560149 |
T |
|
| Q |
409 |
ttatattgttttcctcctccat |
430 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
3560150 |
tcttattcttttcctcctccat |
3560171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University