View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329_high_15 (Length: 248)

Name: NF4329_high_15
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329_high_15
NF4329_high_15
[»] chr2 (20 HSPs)
chr2 (1-241)||(12130603-12130843)
chr2 (8-240)||(88542-88774)
chr2 (1-211)||(34695869-34696079)
chr2 (1-211)||(34718281-34718491)
chr2 (1-211)||(1417946-1418156)
chr2 (1-146)||(9710032-9710177)
chr2 (1-173)||(13109834-13110006)
chr2 (6-240)||(44017288-44017522)
chr2 (3-145)||(14827158-14827300)
chr2 (1-157)||(11292029-11292181)
chr2 (104-231)||(18345555-18345681)
chr2 (1-126)||(26198779-26198904)
chr2 (154-240)||(9709912-9709998)
chr2 (36-159)||(22845600-22845723)
chr2 (1-74)||(18344259-18344332)
chr2 (8-85)||(35158817-35158894)
chr2 (1-46)||(10244535-10244580)
chr2 (16-52)||(25552316-25552352)
chr2 (174-210)||(26198706-26198742)
chr2 (1-41)||(36445484-36445524)
[»] chr4 (22 HSPs)
chr4 (1-240)||(49951296-49951535)
chr4 (1-233)||(55734999-55735231)
chr4 (1-240)||(37245817-37246056)
chr4 (1-240)||(2064836-2065075)
chr4 (1-240)||(32577013-32577252)
chr4 (1-240)||(18442112-18442349)
chr4 (1-240)||(28537752-28537989)
chr4 (1-198)||(26422567-26422764)
chr4 (4-233)||(28426173-28426402)
chr4 (4-233)||(49119368-49119597)
chr4 (5-240)||(29655635-29655870)
chr4 (5-240)||(41835280-41835515)
chr4 (1-240)||(51734937-51735175)
chr4 (1-240)||(21321510-21321752)
chr4 (5-238)||(56065614-56065851)
chr4 (1-238)||(51259494-51259732)
chr4 (8-196)||(47226302-47226490)
chr4 (1-190)||(44936047-44936236)
chr4 (1-126)||(24989899-24990023)
chr4 (35-240)||(43840305-43840511)
chr4 (5-75)||(8754432-8754502)
chr4 (1-36)||(23095401-23095436)
[»] chr5 (18 HSPs)
chr5 (1-233)||(20204945-20205177)
chr5 (1-240)||(4268082-4268321)
chr5 (1-232)||(25730799-25731030)
chr5 (1-240)||(15988714-15988953)
chr5 (1-238)||(26597422-26597659)
chr5 (4-238)||(8388071-8388305)
chr5 (5-240)||(12660299-12660534)
chr5 (1-240)||(11375487-11375717)
chr5 (54-240)||(22767275-22767461)
chr5 (3-214)||(34652221-34652432)
chr5 (8-240)||(27292417-27292649)
chr5 (1-240)||(27532871-27533110)
chr5 (1-209)||(41940702-41940909)
chr5 (1-192)||(32632546-32632737)
chr5 (9-105)||(23074950-23075046)
chr5 (9-126)||(30222813-30222928)
chr5 (118-231)||(37448117-37448230)
chr5 (1-32)||(22767238-22767269)
[»] chr7 (19 HSPs)
chr7 (1-240)||(16731916-16732155)
chr7 (1-240)||(17710050-17710289)
chr7 (1-232)||(9328567-9328798)
chr7 (1-240)||(16098473-16098712)
chr7 (1-240)||(29200920-29201159)
chr7 (1-231)||(22289233-22289463)
chr7 (1-233)||(1581605-1581838)
chr7 (1-232)||(17877399-17877620)
chr7 (8-233)||(30493582-30493806)
chr7 (1-135)||(3601740-3601874)
chr7 (1-132)||(3275125-3275256)
chr7 (9-94)||(30824467-30824552)
chr7 (1-81)||(47580017-47580097)
chr7 (1-43)||(24251619-24251661)
chr7 (118-209)||(30824557-30824646)
chr7 (1-45)||(33224525-33224569)
chr7 (198-240)||(34578440-34578482)
chr7 (1-43)||(44481267-44481309)
chr7 (156-201)||(3601683-3601728)
[»] chr1 (14 HSPs)
chr1 (1-240)||(44527236-44527475)
chr1 (1-240)||(5609322-5609561)
chr1 (1-238)||(48949689-48949926)
chr1 (1-233)||(4395149-4395380)
chr1 (1-233)||(25682641-25682873)
chr1 (1-240)||(36733679-36733918)
chr1 (1-231)||(51113307-51113537)
chr1 (3-240)||(52109437-52109673)
chr1 (1-210)||(44602765-44602974)
chr1 (9-211)||(16816770-16816974)
chr1 (1-124)||(24538586-24538709)
chr1 (1-140)||(2885306-2885449)
chr1 (48-240)||(48166220-48166412)
chr1 (1-121)||(21031251-21031371)
[»] chr3 (20 HSPs)
chr3 (1-240)||(53497015-53497254)
chr3 (1-238)||(55199496-55199733)
chr3 (1-240)||(42340242-42340481)
chr3 (1-210)||(11020145-11020354)
chr3 (1-132)||(24176861-24176992)
chr3 (5-132)||(27608872-27608999)
chr3 (1-132)||(34497337-34497468)
chr3 (1-133)||(31341690-31341826)
chr3 (5-238)||(2615478-2615701)
chr3 (1-179)||(647135-647306)
chr3 (15-240)||(46007285-46007507)
chr3 (1-90)||(27747650-27747739)
chr3 (3-162)||(2121142-2121301)
chr3 (1-97)||(19117685-19117781)
chr3 (1-65)||(55213483-55213547)
chr3 (1-47)||(26046864-26046910)
chr3 (168-233)||(647343-647408)
chr3 (87-205)||(48227431-48227550)
chr3 (171-240)||(27941129-27941198)
chr3 (1-52)||(1702854-1702905)
[»] chr6 (12 HSPs)
chr6 (1-240)||(14680145-14680384)
chr6 (1-240)||(15605959-15606198)
chr6 (5-240)||(28107122-28107357)
chr6 (3-209)||(29368023-29368229)
chr6 (1-230)||(19690844-19691073)
chr6 (1-240)||(15053140-15053379)
chr6 (1-233)||(11731634-11731863)
chr6 (1-113)||(34104430-34104542)
chr6 (19-240)||(30801974-30802195)
chr6 (1-77)||(21944593-21944669)
chr6 (13-125)||(27443029-27443140)
chr6 (1-44)||(3100424-3100468)
[»] chr8 (13 HSPs)
chr8 (1-240)||(23853915-23854154)
chr8 (1-233)||(478021-478253)
chr8 (1-240)||(40588695-40588934)
chr8 (15-233)||(185570-185787)
chr8 (1-240)||(13415006-13415245)
chr8 (1-240)||(8451088-8451327)
chr8 (9-229)||(7127217-7127437)
chr8 (8-141)||(33642736-33642869)
chr8 (1-228)||(37712074-37712295)
chr8 (1-123)||(11870364-11870486)
chr8 (1-133)||(598202-598334)
chr8 (1-120)||(3606704-3606823)
chr8 (148-208)||(9496797-9496857)
[»] scaffold0446 (1 HSPs)
scaffold0446 (5-238)||(171-408)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-207)||(229-434)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-125)||(44221-44332)
[»] scaffold0198 (1 HSPs)
scaffold0198 (1-48)||(20333-20380)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12130603 - 12130843
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12130603 tcacctcgaagttggaatgtaaatataactgataaataatactagaaataatagcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 12130702  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12130703 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcctccccctccaacact 12130802  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataat 241  Q
     ||||||||||||| |||||||||||||||||| |||||||    
T  12130803 atcatatttgctcgctgtcatttcgtttgagcccgaataat 12130843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 88774 - 88542
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagta 107  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||  |   ||| ||||||||||| |||||||||    
T  88774 gaagttggaatgtaaagctaactgataaataatactggaaacaatagcatagaattctgaatcaccatgatcttgagacgatagagcttgcactagagta 88675  T
Q  108 gatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatat 207  Q
    |||||||| |||||||||| |||||| | |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  88674 gatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtcatat 88575  T
Q  208 ttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||| | ||| |||||| |||||||| ||||||    
T  88574 ttgcccattgccatttcatttgagcccgaataa 88542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34695869 - 34696079
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| |||| ||| ||||  ||||| ||    
T  34695869 tcacctcgaagttggaatgtaaagataactggtaaattatactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcac 34695968  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  ||||| |||||||||| |||||| | |||||||||  ||||| |||||||||  |||| ||||||||||||||||||||||||||| |||    
T  34695969 tagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaact 34696068  T
Q  201 gtcatatttgc 211  Q
    |||||||||||    
T  34696069 gtcatatttgc 34696079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34718281 - 34718491
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| |||| ||| ||||  ||||| ||    
T  34718281 tcacctcgaagttggaatgtaaagataactggtaaattatactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcac 34718380  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  ||||| |||||||||| |||||| | |||||||||  ||||| |||||||||  |||| ||||||||||||||||||||||||||| |||    
T  34718381 tagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaact 34718480  T
Q  201 gtcatatttgc 211  Q
    |||||||||||    
T  34718481 gtcatatttgc 34718491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 1417946 - 1418156
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccat-gtcccgaagatgatagagcttgga 99  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |||  |||||||||| |    
T  1417946 tcacctcgaagttggaatgtaaagataattgataaataatactagaaacaatagcatagaattctgaatcaccatagtccag-agacaatagagcttgaa 1418044  T
Q  100 ctagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacac 199  Q
    ||||||||||||||||||||||||||| |||||  | |||||| ||||||||| ||||   ||   |||||||||||||||||| ||| |||| ||  ||    
T  1418045 ctagagtagatgagtcagactcgaagacaacccagtcccatctgtttgcatcagcaaatcaaattacctcgagtaaggctactgtctctcccttcataac 1418144  T
Q  200 tgtcatatttgc 211  Q
     |||||||||||    
T  1418145 cgtcatatttgc 1418156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9710177 - 9710032
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||  || ||||||||||| ||    
T  9710177 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaattgcatagaattatgaattaccatgtcccgctgacgatagagcttgcac 9710078  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctattt 146  Q
    |||||||    ||||||||||||||| |||||| | ||||||||||    
T  9710077 tagagtatcaaagtcagactcgaagacaacccggtcccatctattt 9710032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13109834 - 13110006
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||| | ||||||||||||||||||||||||||||||||| |||| ||| || || |||||  |||||||||| |||||||| ||||||||||  ||    
T  13109834 tcacctcaacgttggaatgtaaagataactgataaataatactggaaacaatagcttataattccaaatcaccatggcccgaagacgatagagcttccac 13109933  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagt 173  Q
    ||||||||| ||||| |||||||||| ||||   | ||||||  | |||||| | |||||||| |||||||||    
T  13109934 tagagtagaagagtcggactcgaagacaaccatgtcccatctgatcgcatcagctaagtgaagggcctcgagt 13110006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 44017288 - 44017522
Alignment:
Q  6 tcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagag 105  Q
    |||||||| ||||| |||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||||||  || ||| ||||||||||| |||| ||    
T  44017288 tcgaagttagaatgaaaagataactgataaataatacaagaaacaatggcatataattcttaatgaccatgtttcggagacgatagagcttgcactaaag 44017387  T
Q  106 tagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcat 205  Q
    ||   |||||||||||||||| |||  | |  ||| | ||  ||| | ||| |||||  || |||||||||| |  || |||||||||||| ||||||||    
T  44017388 taacggagtcagactcgaagacaacttggtctcatatgttcacattagcaacgtgaatggcatcgagtaaggttgttgtctccccctccaaaactgtcat 44017487  T
Q  206 atttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||| || ||||||||  |||||||| ||||||    
T  44017488 atttgcacggtgtcattttatttgagcccgaataa 44017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 14827300 - 14827158
Alignment:
Q  3 acctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggacta 102  Q
    |||||||||||||||||||||||||||| ||| |||||| || ||||||| ||||||||||  ||||||||||| ||| || | ||||||||||| ||||    
T  14827300 acctcgaagttggaatgtaaagataactaatacataatattataaataatagcatagaatttcgaatcaccatgacccaaacacgatagagcttgcacta 14827201  T
Q  103 gagtagatgagtcagactcgaagataacccgattccatctatt 145  Q
    |||||| | ||||||| || |||| ||| ||||  ||||||||    
T  14827200 gagtagctaagtcagattcaaagacaactcgatctcatctatt 14827158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11292029 - 11292181
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||| |||||| |||||||||||||||||||||| ||| |||  |||| |||| ||||||| ||||  ||||| | ||||||||||| ||    
T  11292029 tcaccttgaagttg-aatgtatagataactgataaataatactataaacaataacataaaattttgaatcatcatg-gccgaaaacgatagagcttgcac 11292126  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaa 157  Q
    ||||||||||||||| ||||| |||| ||||   |||||||||||||||||||||||    
T  11292127 tagagtagatgagtcggactcaaagacaacc--gttccatctatttgcatcaacaaa 11292181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 18345555 - 18345681
Alignment:
Q  104 agtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtc 203  Q
    |||||||||||| || ||||||| ||  |||| |||||| || |||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  18345555 agtagatgagtcggattcgaagacaattcgatcccatctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccct-caaaactgtc 18345653  T
Q  204 atatttgctcgttgtcatttcgtttgag 231  Q
    |||||||  ||||  |||||||||||||    
T  18345654 atatttgtccgttaccatttcgtttgag 18345681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26198904 - 26198779
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||| |||||| |||||||||||||||| |||||||||||||||| ||| ||||||||||   | |||||||| ||   ||| ||||||||||| ||    
T  26198904 tcacctcaaagttgaaatgtaaagataactggtaaataatactagaaacaatagcatagaatttcaattcaccatgacctagagacgatagagcttgcac 26198805  T
Q  101 tagagtagatgagtcagactcgaaga 126  Q
    |||||||| |||||| ||||||||||    
T  26198804 tagagtagctgagtcggactcgaaga 26198779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 9709998 - 9709912
Alignment:
Q  154 caaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||||  || ||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||    
T  9709998 caaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaataa 9709912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 22845723 - 22845600
Alignment:
Q  36 ataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgat 135  Q
    ||||||||||||| ||| || ||||||||||||||||||||  | | ||| ||||||||||| |||||||||||| |||  |||||||||| |||||| |    
T  22845723 ataatactagaaacaatagcctagaattctgaatcaccatgatctggagacgatagagcttgcactagagtagattagttggactcgaagacaacccggt 22845624  T
Q  136 tccatctatttgcatcaacaaagt 159  Q
     |||||| || |||||| ||||||    
T  22845623 cccatctgttcgcatcagcaaagt 22845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18344259 - 18344332
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcacca 74  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||| ||||||||    
T  18344259 tcaccttgaagttggaatgtaaagataactgataattaatactagaaacaatatcatagaattctaaatcacca 18344332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 35158817 - 35158894
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaaga 85  Q
    |||||||||||||||| |||| |||||||||||| |||||| ||| |||||||||||||||||| |||| ||||||||    
T  35158817 gaagttggaatgtaaaaataattgataaataataatagaaacaatagcatagaattctgaatcatcatggcccgaaga 35158894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10244535 - 10244580
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactaga 46  Q
    |||||||||||||||||| ||||| ||||| | |||||||||||||    
T  10244535 tcacctcgaagttggaatctaaagctaactcagaaataatactaga 10244580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 25552352 - 25552316
Alignment:
Q  16 aatgtaaagataactgataaataatactagaaataat 52  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25552352 aatgtaaaaataactgataaataatattagaaataat 25552316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26198742 - 26198706
Alignment:
Q  174 aaggctactgcctccccctccaacactgtcatatttg 210  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  26198742 aaggctactgcatccccctccaaaactgtcatatttg 26198706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36445484 - 36445524
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataata 41  Q
    ||||||||||||||||||||||||| || ||| ||||||||    
T  36445484 tcacctcgaagttggaatgtaaagagaattgaaaaataata 36445524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49951535 - 49951296
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| | ||||||||||||| |||||| ||    
T  49951535 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccacggcccgaagatgataaagcttgcac 49951436  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| ||||| |||||||||| ||| || |||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||| |||    
T  49951435 tagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaatact 49951336  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| || || ||||||||||||||| ||||||    
T  49951335 gtcatatttgcccgctgccatttcgtttgagcccgaataa 49951296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 55735231 - 55734999
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||  ||||||| ||||||||||| ||    
T  55735231 tcacctcgaagttgaaatgttaagataactgatcaataatactagaaacaatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcac 55735132  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||||||| || |||||||| |||||||| |||||| | || ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  55735131 tagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctactgcctccccctccaatact 55735032  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    |||||||||||||| |  |||||||||||||||    
T  55735031 gtcatatttgctcgcttccatttcgtttgagcc 55734999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37245817 - 37246056
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||| || |||||||| ||    
T  37245817 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgaaagagcttgcac 37245916  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || |||||  |||||||||||||||| |||||| | |||||| ||  ||| | ||||||||| ||| ||||||||||||||||||||||||||||| |||    
T  37245917 taaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagcatcgagtaaggctactgcctccccctccaaaact 37246016  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| ||||  ||||||||||| ||| ||||||    
T  37246017 gtcatatttgcccgtttccatttcgtttgtgcccgaataa 37246056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2065075 - 2064836
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||| || | ||| |||||||||||| |    
T  2065075 tcaccttgaagttgaaatgtaaagataactgataaataatactagaaacaatagcatataatttcgaatcaccatgacctggagacgatagagcttgggc 2064976  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| ||||| |||| ||||||| ||||||| ||  ||||| |||||||||| || ||||||||||||||||||||||||| ||| |||    
T  2064975 tagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggcgtcgagtaaggctactgcctcccccttcaatact 2064876  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| || |||||||| ||||||||| ||||||    
T  2064875 gtcatatttgcccgctgtcattttgtttgagcccgaataa 2064836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32577013 - 32577252
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||  || ||| ||||||| ||    
T  32577013 tcacctcgaagttggaatgtaaagataactgataaataatactataaacaatcgcatagaattctgaatcaccatgtcccgctgacgattgagcttgcac 32577112  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  |||||||||||||||| |||||  | |||| | ||| ||||| |||||| || |||  |||||||||||| | ||||||||||||| ||     
T  32577113 tagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagtacctccccctccaaaaca 32577212  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| ||||| ||||||||||||||| ||||||    
T  32577213 gtcatatttgcccgttgccatttcgtttgagcccgaataa 32577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18442112 - 18442349
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  || |||| |||| |||||| ||    
T  18442112 tcaccttgaagttggaatataaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatgggccaaagacgatatagcttgcac 18442211  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||  ||||||||||  ||||||| |||||||| |||||||| || ||| || ||||||| || |||||||||||||||||||||||||||||||| |||    
T  18442212 tag--tagatgagtcgcactcgaaaataacccggttccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatact 18442309  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||| | || |  ||||||||||||||| ||||||    
T  18442310 gtcatattttcccgcttccatttcgtttgagcccgaataa 18442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28537752 - 28537989
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||| |||||||||| |||||||||||| |||  ||| ||||||||||| ||    
T  28537752 tcacctcgaagttggaatgtaatgataactgattaataatactagaaacaatagcatagaattttgaatcaccatggcccagagacgatagagcttgcac 28537851  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || |||||||||||| |||| ||| | |||||| | |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||  | |||    
T  28537852 taaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctc--aaact 28537949  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
     |||||||| | || || ||||||||||||||| ||||||    
T  28537950 atcatattttcccgctgccatttcgtttgagcccgaataa 28537989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 26422567 - 26422764
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||  || ||||||||||| ||    
T  26422567 tcacctcgaagttggaatgtaaagataactgataaataatactaaaaacaatcgcatagaattctgaatcactatgtcccgctgacgatagagcttgcac 26422666  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaaca 198  Q
    |||||||   |||||||||||||||| |||||||| |||||| ||| ||||| |||||| || ||| |||||||||||||||||||||| ||||||||    
T  26422667 tagagtatcagagtcagactcgaagacaacccgatcccatctgtttacatcagcaaagtaaatagcatcgagtaaggctactgcctccctctccaaca 26422764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 28426402 - 28426173
Alignment:
Q  4 cctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| |||||||||||  || ||||||||| | |||||    
T  28426402 cctcgaagttggaatgtaaagataactgataaataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactag 28426303  T
Q  104 agtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtc 203  Q
    ||||   |||||||||| ||||| |||||| | |||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||||||||| || |||    
T  28426302 agtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtc 28426203  T
Q  204 atatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||  |||| |||||||||||||||    
T  28426202 atatttgcctgttgccatttcgtttgagcc 28426173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 49119368 - 49119597
Alignment:
Q  4 cctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| |||||||||||  || ||||||||| | |||||    
T  49119368 cctcgaagttggaatgtaaagataactgataaataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactag 49119467  T
Q  104 agtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtc 203  Q
    ||||   |||||||||| ||||| |||||| | |||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||||||||| || |||    
T  49119468 agtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtc 49119567  T
Q  204 atatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||  |||| |||||||||||||||    
T  49119568 atatttgcctgttgccatttcgtttgagcc 49119597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 29655635 - 29655870
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    |||||||| | |||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29655635 ctcgaagtggaaatgtaaagatagctgataaataatactagaaacaataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactaga 29655734  T
Q  105 gtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtca 204  Q
    ||||   ||||||||||||||| ||| || |||||||| ||  ||||| |||||||||   | |||||||||||||||||||| |||||||| || ||||    
T  29655735 gtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcctctccctccaaaacagtca 29655834  T
Q  205 tatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||| || || ||||| ||||||||| ||||||    
T  29655835 tatttgcccgctgccattttgtttgagcccgaataa 29655870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 41835280 - 41835515
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||| |||| ||| ||||| | ||| ||||||    
T  41835280 ctcgaaattggaatgtaaagataactgataaataatactagaaacaatagcataggattccgaatcaccatggcccggagacgatagcgtttgcactaga 41835379  T
Q  105 gtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtca 204  Q
    |||||||| ||  ||||||||| |||||| | |||||| ||||||||  |||| ||||| | |||||||||||||||||| ||||||||||| |||||||    
T  41835380 gtagatgaatcgaactcgaagacaacccggtcccatctgtttgcatccgcaaaatgaagggtctcgagtaaggctactgcatccccctccaaaactgtca 41835479  T
Q  205 tatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||  | |||||||| ||||||||| ||||||    
T  41835480 tatttgccagctgtcattttgtttgagcccgaataa 41835515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51734937 - 51735175
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||  ||||||||| ||||||||||||  ||  ||| ||||||||||| ||    
T  51734937 tcacctcgaagttggaatgtaaagataacagataaataatactagaaacaatatcatagaattatgaatcaccatggtccagagacgatagagcttgcac 51735036  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| ||| | |||||||||| ||| || | | |||||||  ||||| |||||||||  || ||||||||||||||||||||||||||||| |||    
T  51735037 tagagtagaggagcctgactcgaagacaactcg-tcctatctattcacatcagcaaagtgaatggcatcgagtaaggctactgcctccccctccaaaact 51735135  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| || ||||||||||||| |||| ||||||    
T  51735136 gtcatatttgcacgctgtcatttcgtttaagcccgaataa 51735175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 21321752 - 21321510
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaa-ataatggcatagaattctgaatcaccatgtcccgaagatgatagagc--ttg 97  Q
    |||||| ||||||||||||||||| |||||||||||||||| | ||| | |||  |||||||||||||||||||||| |||  |||  |||||||  |||    
T  21321752 tcaccttgaagttggaatgtaaagctaactgataaataatattggaacacaataacatagaattctgaatcaccatgaccctgagacaatagagcaattg 21321653  T
Q  98 gactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaac 197  Q
     ||||||||||||||||| |||||||||| |||||| | |||||| || ||||||  ||||||||| |||||||||||||||| || ||||||||||||     
T  21321652 cactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctccaaa 21321553  T
Q  198 actgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||    
T  21321552 actgtcatatttgcccgttgccatttcgtttgagcccgaataa 21321510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 56065851 - 56065614
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaat----caccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||| ||||    |||||||  | | ||||||||| ||||| ||    
T  56065851 ctcgaagttggaatgtaaagataactgaaaaataatattagaaacaatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcac 56065752  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| |||||| | |||| ||||  || || |||||||||  || ||||||||||| ||||||||||||||||| |||    
T  56065751 tagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaact 56065652  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  56065651 gtcatatttgctcgttgtcatttcgtttgagcccgaat 56065614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51259494 - 51259732
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||  |||| ||||||||||||||||| |||||||| ||||| ||||| ||    
T  51259494 tcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcac 51259593  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcct-ccccctccaacac 199  Q
    |||||||| |||||| |||||||||| |||| | | | | ||  |  || || |||||||||   | ||||||||||| ||||||| |||||||||| ||    
T  51259594 tagagtagctgagtcggactcgaagacaacctggtccgaactgatcccaacagcaaagtgaatgacatcgagtaaggcaactgcctcccccctccaaaac 51259693  T
Q  200 tgtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  51259694 tgtcatatttgctcgttgccatttcgtttgagcccgaat 51259732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 47226302 - 47226490
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagta 107  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||||||||||| || ||||| |||||||||||  ||| ||||    
T  47226302 gaagttggaatgtaaagataattgataaataatactagaaacaatagcatataaatctgaatcaccatggcctgaagacgatagagcttgctctaaagta 47226401  T
Q  108 gatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaa 196  Q
    |||||||| |||||||| | ||| ||||  ||||| || |||||| ||||||||| ||||||||||||| ||| | |||||||||||||    
T  47226402 gatgagtcggactcgaacacaactcgatctcatctgttcgcatcagcaaagtgaaaagcctcgagtaagactattacctccccctccaa 47226490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 44936047 - 44936236
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||| ||||||| || |||||| | ||||||| ||| ||    
T  44936047 tcacctcgaagttggaatgtaaagataactgataaataataatagaaacaataacatagaattctaaatcaccgtggcccgaaaacgatagagtttgcac 44936146  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctcccc 190  Q
    ||||||| ||||||| |||||||| | ||||| ||| ||||| ||||||| | |||||| |||   |||||||||||||| |||||||||    
T  44936147 tagagtaaatgagtcggactcgaacacaacccaatttcatctgtttgcattagcaaagtaaaggatctcgagtaaggctattgcctcccc 44936236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 24989899 - 24990023
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||| ||||||||| || |||  ||| | ||||||||| ||    
T  24989899 tcacctcgaagttggaatgtaaagataactgataaataatactagaaa-cataacatagaattttgaatcaccgtggcccagagacggtagagcttgcac 24989997  T
Q  101 tagagtagatgagtcagactcgaaga 126  Q
    |||||||| |||||||||||| ||||    
T  24989998 tagagtagctgagtcagactcaaaga 24990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 43840305 - 43840511
Alignment:
Q  35 aataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccga 134  Q
    |||||||||||||| ||| ||||||||||| |||||||||||  ||||||| ||||||||||| | |||||||| ||||||  ||||||||| || |||     
T  43840305 aataatactagaaacaatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccgg 43840404  T
Q  135 ttccatctatttgcatcaacaaagtgaagagcctcgagt-aaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    |  ||| | ||  ||||| |||||||||  || |||||| |||| |  || ||||||||||||||||||||||||||  || || |||||||||||| ||    
T  43840405 tctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgttgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccc 43840504  T
Q  234 agaataa 240  Q
     ||||||    
T  43840505 cgaataa 43840511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 8754432 - 8754502
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccat 75  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||||||  |||||||||    
T  8754432 ctcgaagttggaatgtaaagataattgataaataatactaaaaacaatagtatagaattccaaatcaccat 8754502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23095436 - 23095401
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  23095436 tcacctcgaagttggaatgtaaagataactgataaa 23095401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 20205177 - 20204945
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |||| ||| ||||||||||| ||    
T  20205177 tcacctagaagttggaatgtaaagataactgatatataatactagaaacaatagcatagaattttgaatcaccatgacccggagaggatagagcttgcac 20205078  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| |||||||||| ||| || |||||||| || ||| ||||||||||||  |||||||||||||||||||||||||||||||| |||    
T  20205077 tagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggcctcgagtaaggctactgcctccccctccaatact 20204978  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||||| ||||| |||||||||||||||    
T  20204977 gtcatatttgcccgttgccatttcgtttgagcc 20204945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4268321 - 4268082
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||| ||||||||||| |||| ||||||||||||||| ||    
T  4268321 tcaccttgaagttggaatgtaaagataactgagaattaatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcac 4268222  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| |||||||||| |||||| | ||| || || |||||| |||||||||| ||||| |||||||||||||||||||||||||| |||    
T  4268221 tagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaact 4268122  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| || || ||||| ||||||||| ||||||    
T  4268121 gtcatatttgcccgctgccattttgtttgagcctgaataa 4268082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25731030 - 25730799
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||  ||||||||||| |||||||||| |||  ||| ||||||||||| ||    
T  25731030 tcacctggaagttggaatgtaaatataactgataaataatactagaaacaataacatagaattcttaatcaccatgaccctgagacgatagagcttgcac 25730931  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| |||||||||| ||| |  | |||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||| |||    
T  25730930 tagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaaaact 25730831  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagc 232  Q
    ||||||||||| || || ||||||||||||||    
T  25730830 gtcatatttgcccgctgccatttcgtttgagc 25730799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15988714 - 15988953
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||| || ||||| ||||||| ||| ||    
T  15988714 tcacctcgaagttgtaatgtaaagataactgataaataatactagaaacaataacatagaattccgaatcaccatggcctgaagacgatagagattgcac 15988813  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||| | |||| ||||| |||||| | |||| | || |||||| |||||| ||| ||||||||||||| |||||||||||||||||| |||    
T  15988814 tagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggcctcgagtaaggttactgcctccccctccaaaact 15988913  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||  || || ||||||||||||||| ||||||    
T  15988914 gtcatatttgtccgctgccatttcgtttgagcccgaataa 15988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26597422 - 26597659
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| |||  |||| ||||| ||||||||||| |||| ||| ||||| ||||| ||    
T  26597422 tcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaattccgaatcaccatggcccggagacgatagcgcttgcac 26597521  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| |||||| |  ||||||||  || |  |||||||||  || ||||||||||| ||||||||||||||||| | |    
T  26597522 tagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaatt 26597621  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  26597622 gtcatatttgctcgttgccatttcgtttgagcccgaat 26597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 8388305 - 8388071
Alignment:
Q  4 cctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactag 103  Q
    |||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||| ||||||||||||||||| || | ||| ||||| ||||| |||||    
T  8388305 cctcgaagttggaatgtaaagaaaactgaaaaataatactggaaacaatagcataaaattctgaatcaccatggcctggagacgatagcgcttgcactag 8388206  T
Q  104 agtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtc 203  Q
    ||||| |||||| |||||||||| |||||| | |||||| ||  || |  |||||||||  || ||||||||||| ||||||||||||||||| ||||||    
T  8388205 agtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtc 8388106  T
Q  204 atatttgctcgttgtcatttcgtttgagccagaat 238  Q
    ||||||| |||||| ||||||||||||||| ||||    
T  8388105 atatttgttcgttgccatttcgtttgagcctgaat 8388071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 12660534 - 12660299
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||| |||  ||||||||||||||||||| || |||||||| ||||||||||| ||||||    
T  12660534 ctcgaagttagaatgtaaacataactgaaaaataatactagaaacaatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactaga 12660435  T
Q  105 gtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtca 204  Q
    |||| |||||||||||||| |||||| || |  ||| | ||  ||| | |||||||||   | ||||||||| |||||||||||| ||| ||||||||||    
T  12660434 gtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgacatcgagtaagactactgcctcccgctctaacactgtca 12660335  T
Q  205 tatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||| || || ||||||||||||||| ||||||    
T  12660334 tatttgcccgctgccatttcgtttgagcccgaataa 12660299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11375487 - 11375717
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||| ||||||||||||||||||||| ||||||||||| |||          |||||||| |||||||||||  ||| ||| ||||||||||| ||    
T  11375487 tcacctcggagttggaatgtaaagataactcataaataatacgagag---------tagaattccgaatcaccatggaccggagacgatagagcttgcac 11375577  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||| ||||||| |||||||| |||| |||||| | |||| ||||||||||  |||| ||||| ||||||||||||||||||| |||||||||||| |||    
T  11375578 tagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggcctcgagtaaggctactgtctccccctccaaaact 11375677  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||| |||| || ||||||||||||| | ||||||    
T  11375678 gtcatatttactcgctgccatttcgtttgagtccgaataa 11375717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 22767275 - 22767461
Alignment:
Q  54 gcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaa 153  Q
    |||||||||||||||| |||||||||||  || ||||||||||| |||||||||   |||||| ||||||||| |||||| | |||||| ||| |||||     
T  22767275 gcatagaattctgaattaccatgtcccgctgacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcag 22767374  T
Q  154 caaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||| |||  |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| ||||||    
T  22767375 caaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataa 22767461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 34652221 - 34652432
Alignment:
Q  3 acctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggacta 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||  |||| ||||||||||||||||| |||  ||| | ||||||||| ||||    
T  34652221 acctcgaagttggaatgtaaagataattgataaataatactagaaacaataacatataattctgaatcaccatggcccagagacggtagagcttgcacta 34652320  T
Q  103 gagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgt 202  Q
    ||||||  ||||| | |||||||| |||||||| |||||| ||  ||||  |||||||||  || |||||||||| || |  |||||| | |||||||||    
T  34652321 gagtagtcgagtcgggctcgaagacaacccgatcccatctgttcacatcggcaaagtgaatggcatcgagtaaggttattatctccccttacaacactgt 34652420  T
Q  203 catatttgctcg 214  Q
    ||||||||||||    
T  34652421 catatttgctcg 34652432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 27292649 - 27292417
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagta 107  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||  |||||||||| || | ||| ||||||| ||| ||||||| |    
T  27292649 gaagttggaatgtaaagataactgataattaatactagaaacaatagcataaaattccaaatcaccatggcctggagacgatagagtttgcactagagca 27292550  T
Q  108 gatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatat 207  Q
    ||||||||  ||||||||| |||||| | |||||| ||  ||||| |||||||||| || || |||||||||| ||||||||||| ||| ||  | ||||    
T  27292549 gatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggcatctagtaaggctattgcctcccccttcaaaacaataatat 27292450  T
Q  208 ttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||  || || ||||| ||||||||| ||||||    
T  27292449 ttgtccgctgccattttgtttgagcccgaataa 27292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27532871 - 27533110
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||| |||| ||| |||| ||  || ||    
T  27532871 tcacctcgaagttggaatgtaaagataactgataaataatacttgaaacaatagcaaagaattctgaatcaccatgacccggagacgataaagtctgcac 27532970  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || || ||   |||| |||||||| | |||||| | |||||||||  ||||| |||||||||   | |||| ||| |||| ||||||||||||||| |||    
T  27532971 taaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgacatcgaataaagctattgcctccccctccaaaact 27533070  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    || |||||| |  | |  ||||||||||||||| ||||||    
T  27533071 gttatattttcctgctaccatttcgtttgagcccgaataa 27533110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 41940702 - 41940909
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||| |||  ||  ||| ||||||| ||| ||    
T  41940702 tcacctcgaagttggaatgtaaagataaccggtaaataatactagaaacaatagcatagaattctgaatcacaatggtccagagacgatagagtttgcac 41940801  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| ||||||  ||||  | ||  ||| | |||||||||   | | ||||||||||| || |||||||||||| |||    
T  41940802 tagagtagttgagtcggactcgaagacaacccg-gtccagttgttcacatgagcaaagtgaatgacattgagtaaggctattgtctccccctccaaaact 41940900  T
Q  201 gtcatattt 209  Q
    |||||||||    
T  41940901 gtcatattt 41940909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32632737 - 32632546
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| |||||||||||||||  |||||||||| |||||| |||| |||||||||||||||||| ||| | || ||| |||| |||||  ||    
T  32632737 tcacctcgaagttagaatgtaaagataacaaataaataatattagaaacaatgtcatagaattctgaatcactatggctcggagacgataaagcttacac 32632638  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccct 192  Q
    || |||||||||||||||||| |||| |||||| ||  ||||||| | ||||  ||| ||||  ||||||||||||| || || ||||||||    
T  32632637 taaagtagatgagtcagactcaaagacaacccggtttaatctattcgtatcagtaaaatgaaaggcctcgagtaaggttattgtctccccct 32632546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 23075046 - 23074950
Alignment:
Q  9 aagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagag 105  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||  ||||||||| ||||||||||||  ||||||| |||| |||||| |||||||    
T  23075046 aagttggaatgtaaacataactgataaataatactataaacaataacatagaattatgaatcaccatggaccgaagacgataaagcttgcactagag 23074950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 30222813 - 30222928
Alignment:
Q  9 aagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtag 108  Q
    ||||| |||||||||||||| |||||||  || ||| ||| ||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||||||||||    
T  30222813 aagttagaatgtaaagataattgataaa--attctataaacaatagcatagaattccgaatcaccgtgacccgaagacgatagcgcttgcactagagtag 30222910  T
Q  109 atgagtcagactcgaaga 126  Q
     ||||||||| |||||||    
T  30222911 ctgagtcagattcgaaga 30222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 37448230 - 37448117
Alignment:
Q  118 actcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttg 217  Q
    ||||||||| |||||| |||||||| ||  ||||| |||||||||   | |||||||||||||| |||||||| | |||||||||||| ||||| || ||    
T  37448230 actcgaagacaacccggttccatctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccctttcaacactgtcatgtttgcacgctg 37448131  T
Q  218 tcatttcgtttgag 231  Q
     ||||| |||||||    
T  37448130 ccattttgtttgag 37448117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22767238 - 22767269
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactga 32  Q
    ||||||||||||||||||||||||||||||||    
T  22767238 tcacctcgaagttggaatgtaaagataactga 22767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16732155 - 16731916
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||||||||||||| ||    
T  16732155 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcac 16732056  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| ||||| |||||||||| ||| || |||||||| || |||||| || ||||||  |||||||||||||||||||||||||||||||| |||    
T  16732055 tagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatact 16731956  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| |  || ||||||||||||||| ||||||    
T  16731955 gtcatatttgccctctgccatttcgtttgagcccgaataa 16731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17710289 - 17710050
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||||||||||||| ||    
T  17710289 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcac 17710190  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| ||||| |||||||||| ||| || |||||||| || |||||| || ||||||  |||||||||||||||||||||||||||||||| |||    
T  17710189 tagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatact 17710090  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| |  || ||||||||||||||| ||||||    
T  17710089 gtcatatttgccctctgccatttcgtttgagcccgaataa 17710050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9328567 - 9328798
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||  || ||||||||||| ||    
T  9328567 tcacatcgaagttggaatgtaaagataactgataaataatactagaaacaaacgcatagaattctgaattaccatgtcccgctgacgatagagcttgcac 9328666  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||   ||||||||||| |||| |||||| | |||||| ||| ||||| ||||||||| |||  |||||||||||||||||||||||||||| ||     
T  9328667 tagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaaca 9328766  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagc 232  Q
    ||||||||| | ||||| ||||||||||||||    
T  9328767 gtcatattttcccgttgccatttcgtttgagc 9328798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16098712 - 16098473
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||| |||| ||| ||| ||||||| ||    
T  16098712 tcaccttgaagttggaatgtaaagataactgataactaatactagaaacaatatcatagaattctgaatcaccatggcccggagacgatggagcttgtac 16098613  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| |||||||||| |||||| | |||| | || |||||| |||| ||||| ||||| |||||||||||| |||| |||||||| | |    
T  16098612 tagagtagatgagtcggactcgaagacaacccggtcccatttgttagcatcagcaaattgaagggcctctagtaaggctactacctctccctccaaaatt 16098513  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||||| |||||  ||||||||||||||| ||||||    
T  16098512 gtcatatttgttcgtttccatttcgtttgagcccgaataa 16098473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 29200920 - 29201159
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||| ||||||||||| ||    
T  29200920 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgatagagcttgcac 29201019  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| ||||||||||||||||| |||||| |||||||| ||  ||||| |||||||||   | || |||||   | || ||||||||||||| |||    
T  29201020 tagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgacatcaagtaaacatgctacctccccctccaaaact 29201119  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||  || |||||||||||||||||| ||||||    
T  29201120 gtcatatttgtccgctgtcatttcgtttgagcccgaataa 29201159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 22289463 - 22289233
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||| ||||| ||||| ||    
T  22289463 tcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcac 22289364  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| | |||| | |||| | ||  || |  |||||||||  || ||||||||||| ||  ||||||||||||| |||    
T  22289363 tagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggcatcgagtaaggcaaccacctccccctccaaaact 22289264  T
Q  201 gtcatatttgctcgttgtcatttcgtttgag 231  Q
    ||||||||||||||||| |||||||| ||||    
T  22289263 gtcatatttgctcgttgccatttcgtctgag 22289233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1581838 - 1581605
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||| ||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||  |||||||||||  ||| ||| ||||||| ||| |     
T  1581838 tcacatcgaagttgaaatgtaaagataactgataaataatattataaacaatggcatagaatttcgaatcaccatggtccggagacgatagagtttgcat 1581739  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcct-ccccctccaacac 199  Q
    ||| ||||||||||  ||||| || | ||||||||  ||||| || |||||| |||||||||| |||||||||||||||||||| | ||||||| || ||    
T  1581738 tagtgtagatgagttggactccaatagaacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcatcccccctcaaaaac 1581639  T
Q  200 tgtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    | | |||||||| |  || |||||||||||||||    
T  1581638 tataatatttgccctctgccatttcgtttgagcc 1581605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17877620 - 17877399
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||| |||  | | ||||||||||| ||    
T  17877620 tcacctcgaaattgaaatgtaaagataactgataaataatactagaaacaatagcatagaattacgaatcaccatgacccataaacgatagagcttgcac 17877521  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
              |||||||||||||||| ||||||||||||||| || ||||    ||||||||| |||| ||||||||||||| ||||||||||||| |||    
T  17877520 ----------gagtcagactcgaagacaacccgattccatctgttcgcatttgtaaagtgaagggccttgagtaaggctacttcctccccctccaatact 17877431  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagc 232  Q
    ||||||||| | || ||  |||||||||||||    
T  17877430 gtcatatttccccgctgcgatttcgtttgagc 17877399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 30493582 - 30493806
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagta 107  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  30493582 gaagttgaaatgtaaagataactgataaataatactataaacaatagcataaaattctgaatcaccatggcccgaagacgatagagcttgcactagagta 30493681  T
Q  108 gatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatat 207  Q
      |||||| |||||||||| |||| | |  ||||| ||   |||| | |||||||   | || |||||||||||||||| ||||||||| |||||||||     
T  30493682 attgagtcggactcgaagacaacctggtctcatctgttcatatcagctaagtgaacgacatcaagtaaggctactgcct-cccctccaaaactgtcatac 30493780  T
Q  208 ttgctcgttgtcatttcgtttgagcc 233  Q
    |||   | || |||||||||||||||    
T  30493781 ttgtctgctgccatttcgtttgagcc 30493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 3601874 - 3601740
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||  ||  ||| |||| |||||| ||    
T  3601874 tcacctcgaatttagaatgtaaagataactgataaataatactagaaacaatagcataaaattctgaatcaccatggtccagagacgataaagcttgcac 3601775  T
Q  101 tagagtagatgagtcagactcgaagataacccgat 135  Q
    ||||||||||||||| |||||||| | ||||||||    
T  3601774 tagagtagatgagtcggactcgaaaacaacccgat 3601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3275256 - 3275125
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||| ||||||| | || ||   ||||||||| ||||| ||    
T  3275256 tcacctcgaagttggaatgtaaagataactgaaaaataatactaaaaacaatagcataaaattatgaatcatcgtggcctagagatgatagcgcttgcac 3275157  T
Q  101 tagagtagatgagtcagactcgaagataaccc 132  Q
    |||||||| |||||| |||||||||| |||||    
T  3275156 tagagtagctgagtcggactcgaagacaaccc 3275125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 30824467 - 30824552
Alignment:
Q  9 aagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagc 94  Q
    ||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||| |||  ||| ||||||||    
T  30824467 aagttggaatgtaaagataactgataaataagactagaaacaataacatagaattctgaatcaccatgacccagagacgatagagc 30824552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 47580097 - 47580017
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccg 81  Q
    |||||||||||||||||| |||||||||||||||||||||||||||   ||| |||||| | |||||||||||||| ||||    
T  47580097 tcacctcgaagttggaatataaagataactgataaataatactagatccaatagcataggactctgaatcaccatggcccg 47580017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24251661 - 24251619
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatact 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24251661 tcacctcgaagttggaatgtaaagataactgataaataatact 24251619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 30824557 - 30824646
Alignment:
Q  118 actcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatattt 209  Q
    ||||||||| |||| ||| |||||| || |||| |  ||||||||| ||||||||||||||||||||||  |||| ||| ||||||||||||    
T  30824557 actcgaagacaacctgatcccatctgttcgcattagaaaagtgaagggcctcgagtaaggctactgcct--cccttcaaaactgtcatattt 30824646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33224525 - 33224569
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactag 45  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  33224525 tcaccttgaagttggaatgtaaagataactgaaaaataatactag 33224569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 34578440 - 34578482
Alignment:
Q  198 actgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||||||||||||||||||||| |||||| ||||||    
T  34578440 actgtcatatttgctcgttgtcatttcgtctgagcccgaataa 34578482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44481309 - 44481267
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatact 43  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  44481309 tcacctcgaagttgaaatgtaaagataactggtaaataatact 44481267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 3601728 - 3601683
Alignment:
Q  156 aagtgaagagcctcgagtaaggctactgcctccccctccaacactg 201  Q
    |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  3601728 aagtgaagggcctcgagtaaggctaccacctccccctccaaaactg 3601683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44527475 - 44527236
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||| ||| ||||||||||| ||||||||||| |||| ||||||||||||||| ||    
T  44527475 tcaccttgaagttggaatgtaaagataactaataattaatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcac 44527376  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
     |||||||||||||| |||||||||| |||||| | |||||| || |||||| |||||||||| ||||| |||||||||||||||||||||||||| |||    
T  44527375 aagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaact 44527276  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||  || || ||||| ||||||||| ||||||    
T  44527275 gtcatatttgtccgctgccattttgtttgagcccgaataa 44527236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5609561 - 5609322
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||| ||||||| ||| ||    
T  5609561 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatgaccctgagacgatagagtttgcac 5609462  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||||||||||  ||||||||| ||||||||  ||||| || ||| || ||||||||||  ||||||||||||||||||||||||||| ||| |||    
T  5609461 tagagtagatgagtcgaactcgaagacaacccgatctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctactgcctcccccttcaaaact 5609362  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
     |||||||||  || ||||||   ||||||||| ||||||    
T  5609361 atcatatttgtccgctgtcatagagtttgagcccgaataa 5609322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 48949689 - 48949926
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| |||| ||| ||||| ||||| ||    
T  48949689 tcacctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcac 48949788  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||   ||||||||| |||||| | |||||| ||  || ||||||||||||  || ||||||||||| ||||||||||||||||| |||    
T  48949789 tagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgcatcgagtaaggcaactgcctccccctccaaaact 48949888  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
     |||||||||||||||| ||||||||||||||| ||||    
T  48949889 ttcatatttgctcgttgccatttcgtttgagcccgaat 48949926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4395380 - 4395149
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||| ||   ||| ||||||||||| ||    
T  4395380 tcacctcaaagttgaaatgtaaagataactgataaataatactataaacaataggatagaattctgaatcaccatgaccttgagacgatagagcttgcac 4395281  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||  ||||||||||||||| | | ||||||||| |||||| |||||||||| |||||||||||||||| ||||| ||||| ||| |||    
T  4395280 tagagtagatgagttggactcgaagataacctggtcccatctattcgcatcagcaaagtgaagggcctcgagtaaggctagtgcct-ccccttcaaaact 4395182  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
     |||||||||| || || ||||||| |||||||    
T  4395181 ctcatatttgcccgctgccatttcgattgagcc 4395149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25682873 - 25682641
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||| ||||||  || |||| ||| ||||||||||| ||    
T  25682873 tcaccttgaagttagaatgtaaagataactgaaaaataatactagaaacaatagtatagaattctaaatcactgtggcccggagacgatagagcttgtac 25682774  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| ||||||| ||||||||| | |||| | |||||| ||  ||| | |||||||||   | |||||||||||||||||||||||||||||||||    
T  25682773 tagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagtaaggctactgcctccccctccaacact 25682674  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||||| ||||| |||||||||||||||    
T  25682673 gtcatatttgcccgttgccatttcgtttgagcc 25682641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36733918 - 36733679
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||| |||| |||| ||| |||| |||||| ||    
T  36733918 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaataacatagaattatgaatcatcatggcccggagacgatatagcttgcac 36733819  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||    |||||||||||||||| |||||| | |||| | ||  ||||| ||||||||| | | | ||||||| ||||||||||||||||||| |||    
T  36733818 tagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataacattgagtaagactactgcctccccctccaaaact 36733719  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    | ||||||| | ||||||||||| ||||||||| ||||||    
T  36733718 gccatatttacccgttgtcattttgtttgagcccgaataa 36733679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51113537 - 51113307
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||| |||  ||| ||||| ||||| ||    
T  51113537 tcacctcgaagttggaatgttaagataactgaaaaataatactagaaacaatagcataaaactccgaatcaccatggcccagagacgatagcgcttgcac 51113438  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| |||||| | |||||| ||  || ||||||||||||   | ||||||||||| ||||||||||||||||| ||     
T  51113437 tagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgacatcgagtaaggcaactgcctccccctccaaaacg 51113338  T
Q  201 gtcatatttgctcgttgtcatttcgtttgag 231  Q
    || |||||||||||||| |||||||||||||    
T  51113337 gttatatttgctcgttgccatttcgtttgag 51113307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 52109673 - 52109437
Alignment:
Q  3 acctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggacta 102  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||| |||  |||||||||| |||||||||||  ||| |||  |||||||||| ||||    
T  52109673 accttgaagttagaatgtaaagataactgataactaatactagaaacaataacatagaattccgaatcaccatggtccggagacaatagagcttgtacta 52109574  T
Q  103 gagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgt 202  Q
    |||||||||| ||| |||| |||| ||||| || |||||| || |||||| ||||||||||  ||||||||||||||||||| ||||||||||| |   |    
T  52109573 gagtagatgaatcacactcaaagacaaccc-atcccatctgttagcatcagcaaagtgaaggacctcgagtaaggctactgcatccccctccaaaatgat 52109475  T
Q  203 catatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||| || || ||||||||||||||| ||||||    
T  52109474 catatttgcccgctgccatttcgtttgagcctgaataa 52109437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 44602974 - 44602765
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||| ||||||||||||||| ||    
T  44602974 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcatagaattttgaatcaccatggcccggagatgatagagcttgcac 44602875  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  |||| ||||||||||  |||||| |  ||||| ||  |||||  ||||||||   | ||||||||| ||| || |||||||||||| | |    
T  44602874 tagagtagcggagttagactcgaaggcaacccggtctcatctgttcacatcagtaaagtgaatgacatcgagtaagactaatgtctccccctccaaaatt 44602775  T
Q  201 gtcatatttg 210  Q
    ||||||||||    
T  44602774 gtcatatttg 44602765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 16816770 - 16816974
Alignment:
Q  9 aagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcac---catgtcccgaagatgatagagcttggactagag 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||   |||| | || ||| | |||| |||| |||||||    
T  16816770 aagttggaatgtaaagataactgataaataatactagaaacaatagcgtagaattccgaatcacgtccatggctcggagacggtagaacttgaactagag 16816869  T
Q  106 tagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcat 205  Q
    |||| ||||| |||||||||| |||||| | |||||| ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||| | ||||||    
T  16816870 tagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctactgcct-cccctccaaaattgtcat 16816968  T
Q  206 atttgc 211  Q
    ||||||    
T  16816969 atttgc 16816974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 24538709 - 24538586
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||| |||||||  |||||| |||| ||    
T  24538709 tcacctcaaagttagaatgtaaagataacagataaataatactagaaataatagcgtagaattctgaatcactatgacccgaagcagatagatcttgcac 24538610  T
Q  101 tagagtagatgagtcagactcgaa 124  Q
    ||||||||| ||||||||||||||    
T  24538609 tagagtagaagagtcagactcgaa 24538586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2885449 - 2885306
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataa----ctgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagctt 96  Q
    ||||| |||||||| |||||||||||||    |||||||||||||||||||| ||| ||||| || || ||||||||||  |||||||| ||||||||||    
T  2885449 tcaccacgaagttgaaatgtaaagataattaactgataaataatactagaaacaatagcatataactccgaatcaccatagcccgaagacgatagagctt 2885350  T
Q  97 ggactagagtagatgagtcagactcgaagataacccgattccat 140  Q
    | |||||||||| |||||| |||||||||| |||||||||||||    
T  2885349 gcactagagtagctgagtctgactcgaagacaacccgattccat 2885306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 48166412 - 48166220
Alignment:
Q  48 ataatggcatagaattctgaatcaccat-gtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctattt 146  Q
    ||||| ||||||||||||| |||||||| ||||| ||||  |||||||||| | |||||||| ||| ||||||||||||| |||||||| |||| ||||     
T  48166412 ataatagcatagaattctgtatcaccatcgtccc-aagactatagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattc 48166314  T
Q  147 gcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
     ||| | |||||||||   | ||||||||||||| || ||||| |||||| ||||||||||||||||| || |||||| |||||||| ||||||    
T  48166313 acataagcaaagtgaatgacatcgagtaaggctattgtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataa 48166220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 21031371 - 21031251
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||||  ||  |||| ||||| ||||||||||   ||| ||| ||||||||||| ||    
T  21031371 tcacctcgaagttaggatgtaaagataattgataaataatactagaaactataacataaaattccgaatcaccatagtccggagacgatagagcttgcac 21031272  T
Q  101 tagagtagatgagtcagactc 121  Q
    |||| ||| ||||||||||||    
T  21031271 tagaatagctgagtcagactc 21031251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 53497254 - 53497015
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||| |||| ||| ||||||||||| ||    
T  53497254 tcaccttgaagttggaatgtaaagataactgataattaatactagaaacaatagcatagaattccgaatcaccatggcccggagacgatagagcttgcac 53497155  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
     |||||||||||||| |||||||||| |||||| | |||||| || |||||| |||||||||| ||||| ||||||||||||||||||||||| || |||    
T  53497154 aagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctcaaaaact 53497055  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||| |||||  || |||||||| ||||||||| ||||||    
T  53497054 gtcacatttgtccgctgtcattttgtttgagcccgaataa 53497015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 55199733 - 55199496
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| |||| ||| ||||| ||||| ||    
T  55199733 tcacctcgaagttggaatgtaaagatgactgaaaaataatactagaaacaatagcataaaattccgaatcaccatgacccgtagacgatagcgcttgcac 55199634  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
     ||||||| |||||| |||| ||||| |||||| | |||||| ||| || ||||||||||||  || ||||||||||| ||||||||||||||||| |||    
T  55199633 cagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaact 55199534  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
    |||||||||    | |||||||||||||||||| ||||    
T  55199533 gtcatatttatcagctgtcatttcgtttgagcccgaat 55199496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42340242 - 42340481
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||| || |||||||| ||    
T  42340242 tcacctcgaagttggaatgtaaagatagctgataaataatattagaaacaatagcatagaattctgaatcaccatggcccggagacgacagagcttgcac 42340341  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || ||||| |||||| |||||||||| ||| || | |||||| ||  ||||  |||||||||   | ||||||| ||||| |||||||||||||||||||    
T  42340342 taaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgacatcgagtagggctattgcctccccctccaacact 42340441  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||| ||| || || ||||| ||||||||| ||||||    
T  42340442 gtcatatctgcccgctgccattttgtttgagcccgaataa 42340481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 11020145 - 11020354
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| ||| |||||| |||  ||    
T  11020145 tcacatcgaggttgaaatgtaaagataattgataaataatactagaaacaatagcacagaattctgaatcaccatggcccggagacgatagaccttacac 11020244  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    | |||||| | ||||||||||||||| |||||  |||||| | ||  ||||| |||||| || ||| |||||||| |||  || |||||||||||| | |    
T  11020245 tggagtagttaagtcagactcgaagacaacccagttccatttgttcccatcagcaaagtaaatagcatcgagtaaagctgatgtctccccctccaaaagt 11020344  T
Q  201 gtcatatttg 210  Q
    ||||||||||    
T  11020345 gtcatatttg 11020354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24176992 - 24176861
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||| || |||||||| ||||||||||| |||  ||| ||||||||||| ||    
T  24176992 tcacctcgaagttggaatgtaaagataacttataaataatactagatacaatagcttagaattccgaatcaccatgacccagagacgatagagcttgcac 24176893  T
Q  101 tagagtagatgagtcagactcgaagataaccc 132  Q
    |||||||| || |||||||||||||| |||||    
T  24176892 tagagtagttgtgtcagactcgaagacaaccc 24176861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 27608872 - 27608999
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| |||| ||| ||||| ||||| ||||||    
T  27608872 ctcgaagttggaatgtaaagataactgaaaaataatactagaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactaga 27608971  T
Q  105 gtagatgagtcagactcgaagataaccc 132  Q
    |||| |||||| |||||||||| |||||    
T  27608972 gtagctgagtcggactcgaagacaaccc 27608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34497337 - 34497468
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||| ||||| ||||||||||| |||| ||| ||||| ||||| ||    
T  34497337 tcacctcgaagttggaatgtaaagataactgaaaaataatactaggaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcac 34497436  T
Q  101 tagagtagatgagtcagactcgaagataaccc 132  Q
    |||||||| |||||| |||||||||| |||||    
T  34497437 tagagtagctgagtcggactcgaagacaaccc 34497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31341690 - 31341826
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaag----atgatagagctt 96  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||| | ||| ||||||||||||||||| |||| ||    | ||||||||||    
T  31341690 tcaccttgaagttggaatgtaaagataactgataaataatattagaaacaatagtataaaattctgaatcaccatgacccggagacgtaggatagagctt 31341789  T
Q  97 ggactagagtagatgagtcagactcgaagataacccg 133  Q
    | ||||||||||  |||||||| ||||||||||||||    
T  31341790 gcactagagtagtggagtcagattcgaagataacccg 31341826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 2615701 - 2615478
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||| |||  |||||||||||||||||||||| | | |||| ||||||||| | ||||||    
T  2615701 ctcgaggttggaatgtaaaaataactgataaataatactaaaaacaatatcatagaattctgaatcaccatggcacaaagacgatagagctcgcactaga 2615602  T
Q  105 gtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtca 204  Q
    |||| |||||| || |  |||| |||   |||       ||  ||||| |||||||||   | ||||||||||||||||||||||||||||| ||| |||    
T  2615601 gtagttgagtcggattgaaagacaac---att-------ttcccatcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaaaactatca 2615512  T
Q  205 tatttgctcgttgtcatttcgtttgagccagaat 238  Q
    ||||||| || || || |||||||||||| ||||    
T  2615511 tatttgcccgctgccaattcgtttgagcccgaat 2615478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 647135 - 647306
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||||||||||||||||||||||||       ||| ||| ||   |||||||||| ||||||||||| |||| ||| ||||||||||| ||    
T  647135 tcacctcgaagttggaatgtaaagataactgata-------ctataaacaacaacatagaattccgaatcaccatggcccggagacgatagagcttgcac 647227  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggct 179  Q
    |||||||||||||||||||||||||||||| || |  ||||| ||  ||||| |||||||||   | ||||||||||||    
T  647228 tagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaaagtgaatgacatcgagtaaggct 647306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 46007507 - 46007285
Alignment:
Q  15 gaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagt 114  Q
    ||||||||| |||||||||||||||| ||||||| ||| ||||| ||||| ||||| ||||| |||| ||| |||| || ||| |||||||||| ||| |    
T  46007507 gaatgtaaaaataactgataaataatgctagaaacaatagcataaaattccgaatcgccatggcccggagacgatatagtttgcactagagtagttgaat 46007408  T
Q  115 cagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcg 214  Q
    | ||||||||||  |||||   |||||| ||   ||| ||||||||||  || || ||||||||||||| ||||||||  || | |||| ||||||| ||    
T  46007407 cggactcgaaga-cacccg--cccatctgttcatatcgacaaagtgaatggcatcaagtaaggctactgtctccccctaaaaaattgtcgtatttgcccg 46007311  T
Q  215 ttgtcatttcgtttgagccagaataa 240  Q
     || ||||||||||||||| ||||||    
T  46007310 ctgccatttcgtttgagcccgaataa 46007285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 27747650 - 27747739
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgata 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||| |||||||||||| |||| ||| ||||    
T  27747650 tcacctcgaagttggaatgtaaagataactgaaaaataatactaaaaacaatagcatagaattttgaatcaccatggcccggagacgata 27747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 2121301 - 2121142
Alignment:
Q  3 acctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggacta 102  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| ||| ||| | |||| ||||| | |||| ||   |||  |||||||||| | ||    
T  2121301 acctcgaagttgagatgtaaagataactgataaataatactagaaacaatagcacaaaattatgaataatcatggcctagagacaatagagcttgcatta 2121202  T
Q  103 gagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaa 162  Q
    |||||| | |||| ||||| || | ||| |||| |||||||||   |||| |||||||||    
T  2121201 gagtagttaagtcggactcaaaaacaacacgatcccatctattcatatcagcaaagtgaa 2121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19117685 - 19117781
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttg 97  Q
    ||||||| || |||||||| ||| |||||||| ||||||||||| ||| ||| ||||| ||||| ||||||||||| |||| ||| ||||| |||||    
T  19117685 tcacctcaaatttggaatgcaaaaataactgaaaaataatactaaaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttg 19117781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 55213547 - 55213483
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattct 65  Q
    ||||||||||||||||| |||||||||||||||| ||||||| | ||| ||| ||||||||||||    
T  55213547 tcacctcgaagttggaacgtaaagataactgatatataataccaaaaacaatagcatagaattct 55213483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26046910 - 26046864
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaa 47  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  26046910 tcacctcaaagttagaatgtaaagataactgataaataatactagaa 26046864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 647343 - 647408
Alignment:
Q  168 tcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    |||||||||||| |||||||||||||||  ||||||||||| || || || |||||||||||||||    
T  647343 tcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgagcc 647408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 48227550 - 48227431
Alignment:
Q  87 gatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtga-agagcctcgagtaaggctactgcc 185  Q
    ||||||||||| ||||||||||||||||| ||||| |||| ||| || ||  ||| |||  ||||| ||||||||  | | ||||||||||||||||||     
T  48227550 gatagagcttgcactagagtagatgagtcggactcaaagacaactcggttttatccattcacatcagcaaagtgatggggtctcgagtaaggctactgca 48227451  T
Q  186 tccccctccaacactgtcat 205  Q
    |||| |||||| || |||||    
T  48227450 tcccactccaatacagtcat 48227431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 27941129 - 27941198
Alignment:
Q  171 agtaaggctactgcctccccctccaacactgtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||||||||||||||||||||| ||| |||||||||  || || ||||| ||||||| | ||||||    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataa 27941198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1702854 - 1702905
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataat 52  Q
    |||||| |||||| ||||||||||||||||  |||||||||||| |||||||    
T  1702854 tcaccttgaagttcgaatgtaaagataactagtaaataatactaaaaataat 1702905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14680384 - 14680145
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||   |||| ||||||||||||||| |     
T  14680384 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcagagaattttgaatcaccactgcccggagatgatagagcttgcaa 14680285  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| ||||| || || |||| ||| || |||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||    
T  14680284 tagagtagacgagtcggaatcaaagacaactcggttccatctgtttgcatcagcagagtgaagggcctcgagtaaggctactgcctccccctccaatact 14680185  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||| | || || |||||| ||||||||| |||||    
T  14680184 gtcatattttcccgctgccatttcatttgagccataataa 14680145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15605959 - 15606198
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||| ||   ||| ||||||||||| ||    
T  15605959 tcacctcgaagttggaatgtaaagataactgataaataatactagaaacaatagcatagtgttctgaatcaccatgacctagagacgatagagcttgcac 15606058  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||| ||||| |||||| | |||| | ||  |||||||||||||||  || ||||||||||||||||||||||||||||| |||    
T  15606059 tagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggcatcgagtaaggctactgcctccccctccaaaact 15606158  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||| ||| | || || ||||| ||||||||| ||||||    
T  15606159 gtcatgttttcccgctgccattttgtttgagcccgaataa 15606198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 28107357 - 28107122
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactaga 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||| |||| ||| ||||||||||| ||||||    
T  28107357 ctcgaagttggaatgtaaagataactaataaataatactagaaacaataacatagaattctgaatcaccatggcccggagacgatagagcttgcactaga 28107258  T
Q  105 gtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtca 204  Q
    ||||  |||| ||||||||||| |||  ||| |||||||||   ||   |||||||||  || || |||||||||||||||||||||||||| |||||||    
T  28107257 gtagcggagttagactcgaagacaacgtgatcccatctattcatatttgcaaagtgaatggcatcaagtaaggctactgcctccccctccaaaactgtca 28107158  T
Q  205 tatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||| ||  || || ||||||||||||||| ||||||    
T  28107157 tatctgtccgctgccatttcgtttgagcctgaataa 28107122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 29368023 - 29368229
Alignment:
Q  3 acctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggacta 102  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||  ||| ||||||||||  ||||||| ||| |||| ||| ||||||||||| ||||    
T  29368023 accttgaagttggaaggtaaagataactgataactaatactagaagcaatagcatagaattacgaatcactatgacccggagacgatagagcttgcacta 29368122  T
Q  103 gagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgt 202  Q
     |||||||||||| |||||||| | |    | | ||||||||| |||||| |||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  29368123 tagtagatgagtcggactcgaaaacagttaggtcccatctattagcatcagcaaagtgaagggcctcgagtaaggatattgcctccccctccaaaactgt 29368222  T
Q  203 catattt 209  Q
    |||||||    
T  29368223 catattt 29368229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 19690844 - 19691073
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||| | |  ||| ||||||||||| ||    
T  19690844 tcacctcaaagtttaaatgtaaagataactgataaataatactagaaacaatgacatagaattccaaatcaccatgactcagagacgatagagcttgcac 19690943  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || ||||| ||||||||||||||||| ||| || |  ||||| ||  ||||| |||||||||   | |||| |||||||| ||||||||| ||||| ||     
T  19690944 taaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatgacatcgaataaggctattgcctccccttccaaaacg 19691043  T
Q  201 gtcatatttgctcgttgtcatttcgtttga 230  Q
    ||||||||||  ||||||||||||||||||    
T  19691044 gtcatatttgtccgttgtcatttcgtttga 19691073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15053140 - 15053379
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||| |||||||||||| |||| |||||||||||| || ||  ||  ||||||||||| ||||||||||| |||||||| ||||| | ||| ||    
T  15053140 tcacctcgaaattggaatgtaaatataattgataaataatattataagcaacagcatagaattccgaatcaccatggcccgaagacgatagcgtttgcac 15053239  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| ||||   |  ||| | ||  | ||| ||| | |||  || |||||||||||||||||||||||||||||||||    
T  15053240 tagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggcatcgagtaaggctactgcctccccctccaacact 15053339  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
     |||||||| | || |||||| | ||||||||| ||||||    
T  15053340 atcatatttacccgctgtcatcttgtttgagcccgaataa 15053379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11731634 - 11731863
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||||| || ||| ||||||| |||| |||  |||||||||| ||    
T  11731634 tcacctcgaagttggaatgtaaagataactgataaatattactagaaacagtagcatagaactccgaaccaccatggcccggagacaatagagcttgcac 11731733  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || | |  | ||||| |||||||||| |||| | | | || | ||  ||||| |||||||||||| ||||||  ||||| |||||| ||||||||| |||    
T  11731734 tatattgaaagagtcggactcgaagacaacctgttcctatatgttctcatcagcaaagtgaagagtctcgag--aggctgctgcct-cccctccaaaact 11731830  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||||| || || ||||| |||||||||    
T  11731831 gtcatatttgcccgctgccattttgtttgagcc 11731863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 34104430 - 34104542
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||||||||||||  ||| ||| ||||| ||||| ||    
T  34104430 tcacctcgaagttcgaatgtaaagataactgaaaaataatactaaaaacaatagcataaaattctgaatcaccatggtccggagacgatagcgcttgcac 34104529  T
Q  101 tagagtagatgag 113  Q
    |||||||| ||||    
T  34104530 tagagtagctgag 34104542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 30801974 - 30802195
Alignment:
Q  19 gtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcaga 118  Q
    |||||| || |||||||||||||||||||| |||  ||||||||||  | |||||||| | || | | ||||||||||| |||| ||||| ||| || ||    
T  30801974 gtaaagttatctgataaataatactagaaacaataacatagaattccaagtcaccatggctcggaaacgatagagcttgcactaaagtagctgaatcgga 30802073  T
Q  119 ctcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcgttgt 218  Q
    |||||||| ||||   | |||| | ||  ||||  |||||| ||  || || ||||||||||||||||||||| |||| |||||||||||||| || ||     
T  30802074 ctcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcatctagtaaggctactgcctcccccaccaaaactgtcatatttgcccgctgc 30802173  T
Q  219 catttcgtttgagccagaataa 240  Q
    ||||| |||| |||| ||||||    
T  30802174 cattttgtttaagcccgaataa 30802195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21944593 - 21944669
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgt 77  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  21944593 tcacatcgaagttggaatataaaaataactgataaataatactagaaacaatagcatagaattctgaattaccatgt 21944669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 27443140 - 27443029
Alignment:
Q  13 tggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatga 112  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||||| ||   ||| ||||| || || |||||||||| |||    
T  27443140 tggaatgtaaagataactgaaatataatactagaaacaatagcataaaattctgaatcaccatggcctagagacgatagcgc-tgcactagagtagctga 27443042  T
Q  113 gtcagactcgaag 125  Q
    |||  ||||||||    
T  27443041 gtccaactcgaag 27443029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3100468 - 3100424
Alignment:
Q  1 tcacctcgaagttggaatgtaaa-gataactgataaataatacta 44  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  3100468 tcacctcaaagttggaatgtaaaagataactgataaataatacta 3100424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23854154 - 23853915
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||    
T  23854154 tcaccttgaagttggaatgtaaagataacggataactaatactagaaacaatagcatagaattctgaatcaccatggcccggagacgatagagcttgcac 23854055  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||| |||||||| |||||||||| ||| |  |  ||||| || ||||||||||||||||  ||||| ||||||||||||||||| |||||||| |||    
T  23854054 tagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggcctcaagtaaggctactgcctcaccctccaaaact 23853955  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    |||||||||   || ||||||||||||||| || ||||||    
T  23853954 gtcatatttttccgctgtcatttcgtttgaacccgaataa 23853915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 478021 - 478253
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||  |||| ||| | ||||||||||  |||| ||| ||||||||||| ||    
T  478021 tcaccttgaagttggaatgtaaagataactgataaataatattagaaacaatatcataaaataccgaatcaccataacccggagacgatagagcttgcac 478120  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  |||||||| |||||||||||||| | |||||||||  ||| | |||||||||  || ||||||||||||||||||||||||||||| |||    
T  478121 tagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaaggctactgcctccccctccaaaact 478220  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagcc 233  Q
    ||||||||||| ||||| ||||| |||||||||    
T  478221 gtcatatttgcccgttgccattttgtttgagcc 478253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40588695 - 40588934
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||| |||| ||||  || ||||||| ||  ||    
T  40588695 tcacctcgaagttggaatgtaaagataactgataaataatactataaacaatagcatagaattcagaatcatcatggcccggggacgatagagtttacac 40588794  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||||||| |||||||| |||| |||||| |  ||||| ||||||||  ||||  |||| |||||||||| ||||||||||||||||||||| |||    
T  40588795 tagagtagatgaatcagactcaaagacaacccggtctcatctgtttgcatccgcaaaacgaagggcctcgagtacggctactgcctccccctccaaaact 40588894  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    || |||||||| || || ||||||||||||||| ||||||    
T  40588895 gttatatttgcccgctgccatttcgtttgagcccgaataa 40588934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 185570 - 185787
Alignment:
Q  15 gaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagt 114  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||| ||| || |||||||| |||| |||||  ||||    
T  185570 gaatgtaaagataactgataaataatactagaaacaatagcatagaattctgaatcaccatggtccggagacgaaagagcttgcactaaagtagcagagt 185669  T
Q  115 cagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatttgctcg 214  Q
    |||||||| ||| |||||| |||||||||||  ||||||||||||||| ||  ||||||||||||||| ||| ||||||||| |||||||||||||| ||    
T  185670 cagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagtatcgagtaaggctacttcct-cccctccaaaactgtcatatttgcccg 185768  T
Q  215 ttgtcatttcgtttgagcc 233  Q
    ||  |||||||||||||||    
T  185769 tttccatttcgtttgagcc 185787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13415245 - 13415006
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| ||||| ||||||||||| ||||  || |||| | |||| ||    
T  13415245 tcaccttgaagttggaatgtaaagataattgataaataatactaaaaacaatagcataaaattcagaatcaccatggcccggggacgatataccttgcac 13415146  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||| || || ||||| |||| ||| |||| |||||| ||||||||  ||||  |||| |||||||||||||||||||||||||||||||| |||    
T  13415145 tagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaaggctactgcctccccctccaaaact 13415046  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||  || || ||||||||||||||| ||||||    
T  13415045 gtcatatttgtccgctgccatttcgtttgagcccgaataa 13415006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8451088 - 8451327
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| | |||  |||| ||||| ||||||||||| || | ||| |||| |||||| ||    
T  8451088 tcacctcgaagtttgaatgtaaagataactgatanataatactagacacaataacataaaattccgaatcaccatgacctggagacgataaagcttgcac 8451187  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    || ||||||||||||||||||||||| |||||| | |||||  ||  ||||| | |||||||  |  |||||||| ||||||||||||||||||||||||    
T  8451188 taaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctactgcctccccctccaacact 8451287  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaataa 240  Q
    ||||||||||| || |  | ||| ||||||||| ||||||    
T  8451288 gtcatatttgcccgcttcctttttgtttgagcccgaataa 8451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 7127437 - 7127217
Alignment:
Q  9 aagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtag 108  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  |||||||| || |||||||||| |||| ||| || |||||||| |||| |||||    
T  7127437 aagttggaatgtaaagataactgataaataatacttgaaacaataacatagaatactaaatcaccatggcccggagacgaaagagcttgcactaaagtag 7127338  T
Q  109 atgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatt 208  Q
       ||||||||||||||  |||||| | |||||| ||  ||||| ||||||||| ||| ||||||||||||||| ||||||||||||| ||| |||||||    
T  7127337 catagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagcatcgagtaaggctactacctccccctccaaaactttcatatt 7127238  T
Q  209 tgctcgttgtcatttcgtttg 229  Q
    ||| ||||  |||||| ||||    
T  7127237 tgcccgtttccatttcatttg 7127217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 33642736 - 33642869
Alignment:
Q  8 gaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagta 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||| |||| ||| || |||||||| | |||||||    
T  33642736 gaagttggaatgtaaagataactgataaataatactagaaacaatatcattgaattctgaatcaccatggcccggagacgacagagcttgcattagagta 33642835  T
Q  108 gatgagtcagactcgaagataacccgattccatc 141  Q
    |||||||  |||| ||||| |||| |||||||||    
T  33642836 gatgagttggacttgaagacaacctgattccatc 33642869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37712295 - 37712074
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||  |||||||||  ||    
T  37712295 tcacatcgaagttagaatgtaaagataactcataaataatactagaaacaatagcatagtattctgaatcaccatgt-ccgaagacaatagagcttacac 37712197  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||  | |||| ||| |||||||||| |||  ||||| ||  |||||||||||||||  ||    | ||| |||||| ||| ||||| ||| |||    
T  37712196 tagagtagcagggtcaaactagaagataacctgatctcatctgttcacatcaacaaagtgaatggc----attaaagctactacct-ccccttcaaaact 37712102  T
Q  201 gtcatatttgctcgttgtcatttcgttt 228  Q
    ||||||||| | || |||||||||||||    
T  37712101 gtcatattttcccgctgtcatttcgttt 37712074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11870486 - 11870364
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||| | |  |||  |||||||||| ||    
T  11870486 tcacctcgaagttagaatgtaaagataactgataaataatactagaaacaatagcatagaaatccgaatcaccatggctccgagacaatagagcttgcac 11870387  T
Q  101 tagagtagatgagtcagactcga 123  Q
     ||||||| ||||||||||||||    
T  11870386 aagagtagctgagtcagactcga 11870364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 598202 - 598334
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||| |  ||||||||||| || ||||| ||||||||||| ||    
T  598202 tcaccacgaagttgaaatgtaaagataactaataaataatactagaaacaatagcatagaacttcgaatcaccatgacctgaagacgatagagcttgcac 598301  T
Q  101 tagagtagatgagtcagactcgaagataacccg 133  Q
    |||||||| | |||| |||| ||||| ||||||    
T  598302 tagagtagctaagtccgacttgaagacaacccg 598334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3606704 - 3606823
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||| |||  ||| ||||||| ||| ||    
T  3606704 tcacctcgaagttagaatgtaaagataactgataaataatactagaaacaatagcatagaattccaagtcaccatgaccctgagacgatagagtttgtac 3606803  T
Q  101 tagagtagatgagtcagact 120  Q
    || ||| | |||||| ||||    
T  3606804 taaagttgttgagtcggact 3606823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 9496857 - 9496797
Alignment:
Q  148 catcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacactgtcatatt 208  Q
    |||||||||||||||   | || ||||||||||||||||| |||||||| |||||||||||    
T  9496857 catcaacaaagtgaatgtcatcaagtaaggctactgcctcaccctccaaaactgtcatatt 9496797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 408 - 171
Alignment:
Q  5 ctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaat----caccatgtcccgaagatgatagagcttggac 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||||| ||||    |||||||  | | ||||||||| ||||| ||    
T  408 ctcgaagttggaatgtaaagataactgaaaaataatattagaaacaatagcataaaattccgaattaatcaccatggtctggagatgatagcgcttgcac 309  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    |||||||| |||||| |||||||||| |||||| | |||| ||||  || || |||||||||  || ||||||||||| ||||||||||||||| | |||    
T  308 tagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctcccaaact 209  T
Q  201 gtcatatttgctcgttgtcatttcgtttgagccagaat 238  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  208 gtcatatttgctcgttgtcatttcgtttgagcccgaat 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 229 - 434
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggac 100  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||| || | ||||||||||||||| ||    
T  229 tcacatcgaagttggaatgtaaggataactgataaataatactagaaacaatagcatagaattctgaattaccatgacctggagatgatagagcttgcac 328  T
Q  101 tagagtagatgagtcagactcgaagataacccgattccatctatttgcatcaacaaagtgaagagcctcgagtaaggctactgcctccccctccaacact 200  Q
    ||||||||||||||| |||||||| ||||   ||| |||| | ||||||||| |||| | ||| ||||| |  ||||||||| ||| ||||||||| |||    
T  329 tagagtagatgagtcggactcgaaaataattggatcccatttgtttgcatcagcaaaataaagggcctccaacaaggctactacct-cccctccaaaact 427  T
Q  201 gtcatat 207  Q
    |||||||    
T  428 gtcatat 434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 44221 - 44332
Alignment:
Q  13 tggaatgtaaagataactgataaataatactagaaataatggcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatga 112  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||||| ||   ||| ||||| || || |||||||||| |||    
T  44221 tggaatgtaaagataactgaaatataatactagaaacaatagcataaaattctgaatcaccatggcctagagacgatagcgc-tgcactagagtagctga 44319  T
Q  113 gtcagactcgaag 125  Q
    |||  ||||||||    
T  44320 gtccaactcgaag 44332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20380 - 20333
Alignment:
Q  1 tcacctcgaagttggaatgtaaagataactgataaataatactagaaa 48  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  20380 tcacctcaaagttgacatgtaaagataactgataaataatactagaaa 20333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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