View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329_high_19 (Length: 230)

Name: NF4329_high_19
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329_high_19
NF4329_high_19
[»] chr3 (19 HSPs)
chr3 (10-230)||(2636148-2636368)
chr3 (10-228)||(7323836-7324054)
chr3 (34-230)||(2643793-2643989)
chr3 (11-230)||(767677-767896)
chr3 (10-159)||(2502586-2502735)
chr3 (10-172)||(2658609-2658772)
chr3 (28-230)||(9594029-9594232)
chr3 (10-91)||(7318356-7318437)
chr3 (74-230)||(2477060-2477208)
chr3 (80-175)||(746125-746220)
chr3 (126-219)||(7318434-7318527)
chr3 (133-230)||(754138-754235)
chr3 (137-230)||(9565362-9565455)
chr3 (10-219)||(9561379-9561600)
chr3 (26-75)||(7333796-7333845)
chr3 (181-219)||(7333853-7333891)
chr3 (181-230)||(7442526-7442575)
chr3 (181-209)||(2631806-2631834)
chr3 (13-45)||(7442483-7442515)
[»] scaffold0097 (2 HSPs)
scaffold0097 (84-229)||(34331-34476)
scaffold0097 (19-59)||(34469-34509)
[»] chr2 (2 HSPs)
chr2 (122-190)||(33027115-33027183)
chr2 (133-190)||(33038687-33038744)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 2636368 - 2636148
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2636368 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatt 2636269  T
Q  110 acacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2636268 acacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaactatttaaaatatagtgcaagatgtgagag 2636169  T
Q  210 aatcaacaacacaaattaacc 230  Q
    |||||||||||||||||||||    
T  2636168 aatcaacaacacaaattaacc 2636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 7323836 - 7324054
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatt 109  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||| |||||| |||||| |||||||    
T  7323836 acaatagtattatataacatatttagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaaattttgttcaacaccaagcagacattatt 7323935  T
Q  110 acacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagag 209  Q
    ||| |||| |||||||||||||||||||||||| ||||||||| | |||||| ||||   |||||  ||| ||||||||||||| ||||| |||||||||    
T  7323936 acatctaaatcataacgcaaatcttagaaaatcgaatgacaaagcatttaatacaatatttgattttgaactatttaaaatataatgcaatatgtgagag 7324035  T
Q  210 aatcaacaacacaaattaa 228  Q
    |||||||||| ||||||||    
T  7324036 aatcaacaactcaaattaa 7324054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 2643793 - 2643989
Alignment:
Q  34 agtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattattacacctaactcataacgcaaatct 133  Q
    |||| |||||||||| |||||||||| ||||||| |||||||||| |||||| ||||||||||||| | |||| | ||| |||  || || ||| |||||    
T  2643793 agttcagttcataatgcattgtgcaagatttgaagcaaacattaagaaatttatgcaacactaagcggacattgtaacatctacatcttatcgcgaatct 2643892  T
Q  134 tagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaacc 230  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2643893 tagaaaatcaaatgacaaacattttgatgcaattaatgattgcgaactatttaaaatatagtgcaagatgtgagagaatcaacaactcaaattaacc 2643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 767677 - 767896
Alignment:
Q  11 caatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatta 110  Q
    |||||||||| | | |||||| |||||| ||| |||||  ||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| | |    
T  767677 caatagtattctgtaacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaa 767776  T
Q  111 cacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagaga 210  Q
    || |||   |||||| || |||||||||||||||||||||| || |||||||||||| ||||||| |||  |||||||||||||||||||||||||||||    
T  767777 catctacaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaatatagtgcaagatgtgagaga 767876  T
Q  211 atcaacaacacaaattaacc 230  Q
    || |||||| ||||||||||    
T  767877 attaacaactcaaattaacc 767896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 2502735 - 2502586
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatt 109  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||  | |||||||||| ||||||  ||||||    
T  2502735 acaataatattatataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaatttctgtgcaacaccaagcagaaattatt 2502636  T
Q  110 acacctaactcataacgcaaatcttagaaaatcaaatgacaaacctttta 159  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  2502635 acatctaaatcataacgcaaatcttagaaaatcaaatgacaaacctttta 2502586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 2658609 - 2658772
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattatt 109  Q
    |||||||| |||||| ||||||||||||| ||||||||| || ||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||    
T  2658609 acaatagtgttatataacatattcagtttggttcataatgcagtgtgcaagatttgaagcaaacattaaaacatttgtgcaacactaagcagacattatt 2658708  T
Q  110 acacctaactcataacgcaaatcttag-aaaatcaaatgacaaaccttttaatgcaattgatga 172  Q
    ||| |||| |||||||||||||||||| |||||| ||||||||||| ||||||| |||| ||||    
T  2658709 acatctaattcataacgcaaatcttagaaaaatccaatgacaaaccatttaatgtaattcatga 2658772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 9594029 - 9594232
Alignment:
Q  28 atattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaaca-ctaagcaggcattattacacctaactcataacg 126  Q
    |||| |||||| ||| |||||  ||| ||||| |||||||||||||||||| ||||| |||||||  ||||| || |||| | ||| |||   ||||||     
T  9594029 atatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaattcgtgcaacgtctaagaagacattgtaacatctacaccataaca 9594128  T
Q  127 caaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaacacaaatt 226  Q
     | |||||||||||| |||||||||||  |||||||||||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||| ||||||    
T  9594129 gatatcttagaaaatgaaatgacaaactatttaatgcaattcatgattgtgaactatttaaaatatagtgcaagatatgtgagaatcaacaactcaaatt 9594228  T
Q  227 aacc 230  Q
    ||||    
T  9594229 aacc 9594232  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 7318356 - 7318437
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaa 91  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  7318356 acaatagtattatataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaaaatttgtgcaa 7318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 2477208 - 2477060
Alignment:
Q  74 attaaaaaatttgtgcaacactaagcaggcattattacacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgat 173  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||   ||||||||||||||||||||||||||||||||||  ||||| |||||| |||||    
T  2477208 attaagaaatttgtgcaacactaagcagacattataacatctacaccataacgcaaatcttagaaaatcaaatgacaaacaatttaaagcaattcatgat 2477109  T
Q  174 tgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaacc 230  Q
    ||        | |||| ||||||||| ||||||||||||||||||| |||| |||||    
T  2477108 tg--------tgaaaagatagtgcaaaatgtgagagaatcaacaactcaaactaacc 2477060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 746125 - 746220
Alignment:
Q  80 aaatttgtgcaacactaagcaggcattattacacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattg 175  Q
    ||||||||||| |||||||||  || ||| ||| |||   ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  746125 aaatttgtgcagcactaagcatacaatataacatctacaccataacgcaaatcttagaaaatcaaatgacaaaccattcaatgcaattcatgattg 746220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 7318434 - 7318527
Alignment:
Q  126 gcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaac 219  Q
    ||||||||||||||||| ||||||||||| | |||| ||||   |||||| ||| ||||||||||||| || || |||||||||||||||||||    
T  7318434 gcaaatcttagaaaatcgaatgacaaaccatataattcaatatttgattgtgaactatttaaaatataatggaatatgtgagagaatcaacaac 7318527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 754138 - 754235
Alignment:
Q  133 ttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaacc 230  Q
    |||||||||||||||| ||||| |||||||  ||  ||||||   |||||||||||||||| ||||||||   |||||||||||||| ||||||||||    
T  754138 ttagaaaatcaaatgataaaccatttaatgtcatccatgattattaattatttaaaatataatgcaagattaaagagaatcaacaactcaaattaacc 754235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 9565362 - 9565455
Alignment:
Q  137 aaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaacc 230  Q
    |||||||||||| ||||| ||| |||||||| |  |||   |||||||||||||||| ||||||||  ||||||||||||||| ||||||||||    
T  9565362 aaaatcaaatgataaaccatttcatgcaattcaatattattaattatttaaaatataatgcaagattagagagaatcaacaactcaaattaacc 9565455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 9561379 - 9561600
Alignment:
Q  10 acaatagtattatatgacatattcagtttagttcataatccattgtgcaatatttg----aaacaaacattaaaaaatttgtgcaacactaagcaggcat 105  Q
    ||||||||||||||| ||||||| | || |||||||| | ||| || | | |||||    ||||||||||||| ||| |||||||||||||||||  | |    
T  9561379 acaatagtattatataacatattaaattgagttcatagtgcatcgtacgagatttggagcaaacaaacattaagaaacttgtgcaacactaagcatacct 9561478  T
Q  106 tatta--------cacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaatatagtgc 197  Q
    ||| |        || |||| ||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||| | | ||| | | ||||||||  |||    
T  9561479 tataagtttataacatctaaatcataacccaaatcttagaaaatcaaaagacaaaccatttcatgcaattcatgctcgggaactctctaaaatatgatgc 9561578  T
Q  198 aagatgtgagagaatcaacaac 219  Q
    || ||| |||| ||||||||||    
T  9561579 aaaatgcgagaaaatcaacaac 9561600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 7333796 - 7333845
Alignment:
Q  26 acatattcagtttagttcataatccattgtgcaatatttgaaacaaacat 75  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  7333796 acatattcagtttagttcataatgcattgtgtaagatttgaaacaaacat 7333845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 7333853 - 7333891
Alignment:
Q  181 tatttaaaatatagtgcaagatgtgagagaatcaacaac 219  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  7333853 tatttaaaatatagtgcaagatgtgagcgaatcaacaac 7333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 7442526 - 7442575
Alignment:
Q  181 tatttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaacc 230  Q
    ||||||||||||| ||||||||| |||| |||| ||||| ||||||||||    
T  7442526 tatttaaaatataatgcaagatgcgagaaaatctacaactcaaattaacc 7442575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 2631834 - 2631806
Alignment:
Q  181 tatttaaaatatagtgcaagatgtgagag 209  Q
    |||||||||||||||||||||||||||||    
T  2631834 tatttaaaatatagtgcaagatgtgagag 2631806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 7442483 - 7442515
Alignment:
Q  13 atagtattatatgacatattcagtttagttcat 45  Q
    |||||||||||| ||||||||||||||||||||    
T  7442483 atagtattatataacatattcagtttagttcat 7442515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 34476 - 34331
Alignment:
Q  84 ttgtgcaacactaagcaggcattattacacctaactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattat 183  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||    
T  34476 ttgtgcaacactaagcagacattattacatctaattcataacgcaaatcttagaaaatccaatgacaaaccatttaatgcaattcatgattgtgaactat 34377  T
Q  184 ttaaaatatagtgcaagatgtgagagaatcaacaacacaaattaac 229  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  34376 ttaaaatatagtgcaagatgtgagagaatcaacaactcaaattaac 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 34509 - 34469
Alignment:
Q  19 ttatatgacatattcagtttagttcataatccattgtgcaa 59  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  34509 ttatataacatattcagtttggttcataatgcattgtgcaa 34469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 33027183 - 33027115
Alignment:
Q  122 taacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaat 190  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||  || |||| ||| ||||||||||    
T  33027183 taactcaaattttagaaaatcaaatgacaaaccatctaatgcaatatataattgtgaactatttaaaat 33027115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 33038744 - 33038687
Alignment:
Q  133 ttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaattatttaaaat 190  Q
    |||||||||||||||||||||| | |||| ||||  ||||||| ||| ||||||||||    
T  33038744 ttagaaaatcaaatgacaaaccatctaatacaatatatgattgtgaactatttaaaat 33038687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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