View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4329_high_2 (Length: 499)
Name: NF4329_high_2
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_high_2 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0252 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 20220 - 20693
Alignment:
| Q |
11 |
catcatcacgagttctcgcagctcggaacttgaaccaggtttctcacttttcttcttcctctttt--------------gaatcgattcaaagatttgtt |
96 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
20220 |
catcatcccgagttctcacagctcggaaccagaaccaggtttctcacttttcttcttcctctttttcactccctctttggaatcgatccaaagatttgtt |
20319 |
T |
|
| Q |
97 |
atgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20320 |
atgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaag----------- |
20408 |
T |
|
| Q |
197 |
gagttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaact |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20409 |
---ttggaagcatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaact |
20505 |
T |
|
| Q |
297 |
gggtcagtgagaaagagtggtttatggctagttcttcggtttatagttggttcttagggttctagctagtaataagagtatgaaagagttttggattgtt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20506 |
gggtcagtgagaaagagtggtttatggctagttcttcggtttatagttggttcttagggttctagctagtaataagagtatgaaagagttttggattgtt |
20605 |
T |
|
| Q |
397 |
catagggctatgaaggaaaaagggttctatttagatgaagagacacatgtgacgatttcaacaagtttaaaaggggagaagttgaaga |
484 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20606 |
cttagggctatgaaagaaaaagggttctatttagatgaagagacacatgtgacgatttcaaggagtttaaaaggggagaagttgaaga |
20693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 68 - 484
Target Start/End: Original strand, 43434793 - 43435210
Alignment:
| Q |
68 |
cctcttttgaatcgattcaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgttttta |
167 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43434793 |
cctcttttgaaccgatccaaagatttgttatgttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttggagcgtgttttta |
43434892 |
T |
|
| Q |
168 |
ccaatgattggtctcaagagttagagaaagagttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaa |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43434893 |
ccaatgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgactcatgaaactgttgtttatgttttgaagcgattggataaaaa |
43434992 |
T |
|
| Q |
268 |
cccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagt |
366 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
43434993 |
cccaattaaagtttttacctttttcaattgggtcagtgagaaagagtggtttatggcaagttcttcggtttatagcttggttcttagggttttagctagt |
43435092 |
T |
|
| Q |
367 |
aataagagtatgaaagagttttggattgttcatagggctatgaaggaaaaagggttctatttagatgaagagacacatgtgacgatttcaacaagtttaa |
466 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||| || |||| | |
|
|
| T |
43435093 |
aataaggagatgaaagagttttggattgttcttagggctatgaaggaaaaagggttttatttagatgaagagacgtatttgacgatttctacgggtttga |
43435192 |
T |
|
| Q |
467 |
aaggggagaagttgaaga |
484 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
43435193 |
aaagggagaatttgaaga |
43435210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 100 - 444
Target Start/End: Original strand, 43426320 - 43426665
Alignment:
| Q |
100 |
ttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaagag |
199 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
43426320 |
ttttcacaacagtcataaaaaacactatttttcttcaaaacccaactcaattttagagcgtgtttacaccaatgattggtctgaagagttagagaaagaa |
43426419 |
T |
|
| Q |
200 |
ttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactggg |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
43426420 |
tttgaagaatgtcgtgaatcattgacccatgaaactgttgtttatgttttgaagcgattggataataaccctcttaaagttttcacctttttcaattggg |
43426519 |
T |
|
| Q |
300 |
tcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagtaataagagtatgaaagagttttggattgttca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| || ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
43426520 |
tcagtgagaaagagtggtttatggctagttcttcggcttatagcttggttctcaggattttagctaggaataagaatatgaaagagttttggattgttct |
43426619 |
T |
|
| Q |
399 |
tagggctatgaaggaaaaagggttctatttagatgaagagacacat |
444 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
43426620 |
taaggctatgaaggaaaatgggttttatttagatgaagagacacat |
43426665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 99 - 432
Target Start/End: Original strand, 43440691 - 43441025
Alignment:
| Q |
99 |
gttttcacaacaatcatcaaaaacactatttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaaga |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
43440691 |
gttttcacaacaatcatcaaaaacactgtttttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaaga |
43440790 |
T |
|
| Q |
199 |
gttggaagaatgtcgtgaatcattgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgg |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
43440791 |
gttggaagcatgtcgtgaatcattgacccatgaaactgttgtttatgttttaaatcgattggataaaaacccaattaaagtttttacctttttcaattgg |
43440890 |
T |
|
| Q |
299 |
gtcagtgagaaagagtggtttatggctagttcttcggtttatag-ttggttcttagggttctagctagtaataagagtatgaaagagttttggattgttc |
397 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||||||||||| || ||||||| |||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
43440891 |
gttagtgagaaagattggtttatgtaaagttcttcggtttatagcttagttcttacggttttagctagtaacaagaagatgaaagagttttggattgttc |
43440990 |
T |
|
| Q |
398 |
atagggctatgaaggaaaaagggttctatttagat |
432 |
Q |
| |
|
|| |||||||| ||| |||||||||||||||||| |
|
|
| T |
43440991 |
ttaaggctatgatggataaagggttctatttagat |
43441025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 43421863 - 43421975
Alignment:
| Q |
221 |
ttgacccatgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggttta |
320 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| | ||||||||| ||||| | |||| || | ||||||||| ||||||||| ||||| | |||||| |
|
|
| T |
43421863 |
ttgacccatgaaaccgttgtttacattttgaaacaattggataatgacccattaaaagcttcttgctttttcaattgggtcagtaagaaaaattggtttt |
43421962 |
T |
|
| Q |
321 |
tggctagttcttc |
333 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
43421963 |
tgccaagttcttc |
43421975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 130 - 322
Target Start/End: Original strand, 41930402 - 41930602
Alignment:
| Q |
130 |
ttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaagagttagagaaagagttggaagaatgtcgtgaatcattgacccat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41930402 |
ttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccat |
41930501 |
T |
|
| Q |
230 |
g--------aaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttat |
321 |
Q |
| |
|
| ||||| ||||||||||||| ||| ||||||||||||||| | ||||||||||||||||| |||| ||||| ||||| ||||| |||||||| |
|
|
| T |
41930502 |
gaaactggcaaactgttgtttatgttttaaagtgattggataaaaacctaattaaagtttttacctttatcaattgggttagtgataaagattggtttat |
41930601 |
T |
|
| Q |
322 |
g |
322 |
Q |
| |
|
| |
|
|
| T |
41930602 |
g |
41930602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 40186860 - 40186762
Alignment:
| Q |
224 |
acccatgaaactcttgtttatgtttt-gaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttat |
321 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||| | || |||| |||||||||| | |||||||||||||||| | ||||| | |||||||| |
|
|
| T |
40186860 |
acccatgaaactgttgtttacgtttttgaagcgattggatcataaaccacataaagttttttcttttttcaactgggtcactcagaaacaatggtttat |
40186762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University