View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_high_9 (Length: 295)
Name: NF4329_high_9
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 33647442 - 33647175
Alignment:
| Q |
10 |
acatcatcacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctaccataagaggtgtcctctcttcatatcccatttcct |
109 |
Q |
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| T |
33647442 |
acatcaacacgaccggttccgagaatataagacaacacacccttgcttccatataaagcagctaccataagaggtgtcctctcttcatatcccatttcct |
33647343 |
T |
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| Q |
110 |
ttgatccaaccttccttccataccataaccctacttcatcaacatcatgatcatctttttcaacagcagctgtgaacgccattacatcatctttggctga |
209 |
Q |
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| T |
33647342 |
ttgatccaaccttccttccataccataaccctacttcatcaacattatgatcatctttctcaactgcatctgtgaacgccattacatcatctttggctga |
33647243 |
T |
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| Q |
210 |
aaactcaagcaaaggtgaaatcttatgatgaagttcttcttgtctttcacattcattctccctaatca |
277 |
Q |
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| T |
33647242 |
aaactcaagcaaagctgaaatcttatgatgatgttcttcttgtctttcacattcattttcccttatca |
33647175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 25812262 - 25811994
Alignment:
| Q |
9 |
gacatcatcacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctaccataagaggtgtcctctcttcatatcccatttcc |
108 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||| |||||||||||||||||||| ||| |
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| T |
25812262 |
gacatcaacacgactggttccgagaatataagacaacacacccttgcttccaaataaggcagcaaccataagagccgtcctctcttcatatcccatatcc |
25812163 |
T |
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| Q |
109 |
tttgatccaaccttccttccataccataaccctacttcatcaacatcatgatcatctttttcaacagcagctgtgaacgccattacatcatctttggctg |
208 |
Q |
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| T |
25812162 |
ttcgatccaacccttcttccataccataatcctacctcatcgacttcatgttcgcctttttcaacagcatctgtgaatgccaatacgtcatctttggctg |
25812063 |
T |
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| Q |
209 |
aaaactcaagcaaaggtgaaatcttatgatgaagttcttcttgtctttcacattcattctccctaatca |
277 |
Q |
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| T |
25812062 |
aaaactcaagcaaagccgaaatcttatgatgaagttcttattgtcttccatattcattttccttaatca |
25811994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 25817927 - 25817789
Alignment:
| Q |
17 |
cacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctaccataagaggtgtcctctcttcatatcccatttcctttgatcc |
116 |
Q |
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| T |
25817927 |
cacgaccggttccaagaatataagacaacacacccttgcttccaaacaaggcagcaatcataagaggggtcctttcttcataactcatttcctttgatcc |
25817828 |
T |
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| Q |
117 |
aaccttccttccataccataaccctacttcatcaacatc |
155 |
Q |
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| T |
25817827 |
aatcttccttccataccacaatcctacttcatcaacatc |
25817789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 25817792 - 25817742
Alignment:
| Q |
197 |
catctttggctgaaaactcaagcaaaggtgaaatcttatgatgaagttctt |
247 |
Q |
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| T |
25817792 |
catctttggctgaaaactcaagcaaagctgaaatcttatgatgaagttctt |
25817742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 30121873 - 30121727
Alignment:
| Q |
10 |
acatcatcacgaccggttccgagaatataagacaacacacccttgcttccatataaagcacctaccataagaggtgtcctctcttcatatcccatttcct |
109 |
Q |
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|||||| | ||||| ||||| |||||||||| | | ||| || |||||||| | |||| | ||||| |||||||||||||||||||| || | || | |
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| T |
30121873 |
acatcaacccgacctgttccaagaatataagccgatacatccaaacttccatacatagcagcaaccatgagaggtgtcctctcttcataaccaaatttgt |
30121774 |
T |
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| Q |
110 |
ttgatccaaccttccttccataccataaccctacttcatcaacatca |
156 |
Q |
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| T |
30121773 |
ttgaaccaacgttccttccataccacaaaccaaccccatcaacatca |
30121727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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