View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_low_11 (Length: 287)
Name: NF4329_low_11
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 33647927 - 33647648
Alignment:
| Q |
8 |
gatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33647927 |
gatcgcggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacat |
33647828 |
T |
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| Q |
108 |
cctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgt |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
33647827 |
cctaaattcatctgtactatatattccattctttatgtcaggtagggatggatcaatgggataatctttcttctcggtgtgaggtgtacctacgtcttgt |
33647728 |
T |
|
| Q |
208 |
tgcttctccaccatttggaaacctatttccttaaggaaatcgtcgtcctcgtcatcaacatcatctaccccttctagtat |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33647727 |
tgcttctccaccatttggaaacctatttccttaaggaaattgtcgtcctcgtcatcaacatcatctaccccttctagtat |
33647648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 25812727 - 25812490
Alignment:
| Q |
9 |
atcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatc |
108 |
Q |
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||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25812727 |
atcacggcgccttgcgtt-tcccctggatgaacaaaggggcactcagtccaatcatgagaataa-cccttgaacaaggcttcactttgaatgtaaacatc |
25812630 |
T |
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| Q |
109 |
ctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgtt |
208 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |||| |||||||||||| || ||||||||| |||| | ||| | |
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| T |
25812629 |
ctaaattcatctgtactatatatctcattgtttatgtcaggtagggatggattaattggataatctttcttctcagttcgaggtgtagctacattttgct |
25812530 |
T |
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| Q |
209 |
gcttctccaccatttggaaacctatttccttaaggaaatc |
248 |
Q |
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||| |||||||| ||| ||||||| ||| ||||||||||| |
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| T |
25812529 |
gctgctccaccaattgaaaacctacttctttaaggaaatc |
25812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 25818395 - 25818160
Alignment:
| Q |
8 |
gatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacat |
107 |
Q |
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|||||||||||||||| || ||||| || || |||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||| |||||| |
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| T |
25818395 |
gatcacggcgccttgcgttttccccggggtggacaaagtggcacttggtccaatcatgaggataagcccttaaacaaggcttccctttgaatgcaaacat |
25818296 |
T |
|
| Q |
108 |
cctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttcttctcggtgcgaggtgtacctacgtcttgt |
207 |
Q |
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||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||| || |||||||||| ||| |||||| |
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| T |
25818295 |
cctaaattcatctgtgctatatatctcattttttatgccaggtatggatggatcaattggataatctttcttctcagttcgaggtgtacatacatcttgt |
25818196 |
T |
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| Q |
208 |
tgcttctccaccatttggaaacctatttccttaagga |
244 |
Q |
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|||| ||||| ||||||||||||| ||||||||||| |
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| T |
25818195 |
tgctgctcca-catttggaaacctgcttccttaagga |
25818160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 25821757 - 25821582
Alignment:
| Q |
8 |
gatcacggcgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaa---taagcccttgaacaaggcttcactttgaatgtaaa |
104 |
Q |
| |
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|||||||||||||||| | ||||||| |||| ||||||| || || ||||||||||||| | | | ||| ||| ||| |||||||||||||| || | |
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| T |
25821757 |
gatcacggcgccttgcgatttccccagaatgagcaaagggacattctgtccaatcatgaggagcattatcccatgagcaaagcttcactttgaatttata |
25821658 |
T |
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| Q |
105 |
catcctaaattcatctgtactatatattccattttttatgtcaggtagggatggatcaatgggatgatctttcttc |
180 |
Q |
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||||||||||||||||||| |||||| |||| |||||||||||||||||| |||| || ||| |||||||||| |
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| T |
25821657 |
catcctaaattcatctgtaatatatacctcattctttatgtcaggtagggatcgatcgatccgataatctttcttc |
25821582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 31810735 - 31810635
Alignment:
| Q |
22 |
gcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattcatctg |
121 |
Q |
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| T |
31810735 |
gcattctcccctggatgaacaaatggacactcagtccaatcatgagtgtaaccccttgaacaagtctttactttgaaactatacattctaaattcatctg |
31810636 |
T |
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| Q |
122 |
t |
122 |
Q |
| |
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| |
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| T |
31810635 |
t |
31810635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 9314781 - 9314827
Alignment:
| Q |
22 |
gcattctccccaggatgaacaaaggggcactcagtccaatcatgaga |
68 |
Q |
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|||||||| |||||||| ||||| || |||||||||||||||||||| |
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| T |
9314781 |
gcattctctccaggatgcacaaaaggacactcagtccaatcatgaga |
9314827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 30122347 - 30122217
Alignment:
| Q |
16 |
cgccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaatt |
115 |
Q |
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||||||||||| ||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
30122347 |
cgccttgcattttcccctggatgaacaaaaggacactcggtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtatacatcctaaact |
30122248 |
T |
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| Q |
116 |
catctgtactatatattccattttttatgtc |
146 |
Q |
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|||| ||||||||||| ||||| || ||||| |
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| T |
30122247 |
catcggtactatatatcccattcttaatgtc |
30122217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 35643745 - 35643642
Alignment:
| Q |
18 |
ccttgcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagcccttgaacaaggcttcactttgaatgtaaacatcctaaattca |
117 |
Q |
| |
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|||||||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| || || |||||||| ||||| | |||||||||| ||| |
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| T |
35643745 |
ccttgcattctcacctggatgaacaaagggacactccgtccaatcgtgagagtaagccctcgagcatggcttcaccttgaaactgtacatcctaaactca |
35643646 |
T |
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| Q |
118 |
tctg |
121 |
Q |
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|||| |
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| T |
35643645 |
tctg |
35643642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 36456310 - 36456258
Alignment:
| Q |
22 |
gcattctccccaggatgaacaaaggggcactcagtccaatcatgagaataagc |
74 |
Q |
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||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
36456310 |
gcattctcccctggatgaacaaaagggcattcagtccaatcatgggaataagc |
36456258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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