View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329_low_12 (Length: 279)

Name: NF4329_low_12
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329_low_12
NF4329_low_12
[»] chr7 (4 HSPs)
chr7 (5-271)||(27531753-27532019)
chr7 (10-60)||(27526311-27526361)
chr7 (127-163)||(21052844-21052880)
chr7 (132-176)||(37832642-37832686)
[»] chr5 (2 HSPs)
chr5 (132-169)||(20407905-20407942)
chr5 (131-175)||(30107619-30107663)
[»] chr1 (2 HSPs)
chr1 (119-176)||(3497236-3497293)
chr1 (122-183)||(32483210-32483270)
[»] chr4 (2 HSPs)
chr4 (132-166)||(1678682-1678716)
chr4 (119-176)||(7367548-7367605)
[»] chr3 (3 HSPs)
chr3 (122-184)||(36895359-36895421)
chr3 (131-176)||(33331951-33331996)
chr3 (119-163)||(35335596-35335640)
[»] chr6 (1 HSPs)
chr6 (125-170)||(7250976-7251021)
[»] chr8 (1 HSPs)
chr8 (144-184)||(41953165-41953205)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 27532019 - 27531753
Alignment:
Q  5 catttagctggatgcatatctcccctaacaaacaaagaaagtttgattagagaggaatacttaaaattggatgctataaagcactggcacatacgtacac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27532019 catttagctggatgcatatctcccctaacaaacaaagaaagtttgattagagaggaatacttaaaattgtatgctataaagcactggcacatacgtacac 27531920  T
Q  105 cagatccgatactgacataaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttgatgtcaaacagccacacatgtcggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27531919 cagatccgatactgacataaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttgatgtcaaacagccacacatgtcggat 27531820  T
Q  205 accggatacaccttcaacatgtgctacgtagatcaaaagataaataagatactaaaatagaataatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27531819 accggatacaccttcaacatgtgctacgtagatcaaaagataaataagatactaaaatagaataatt 27531753  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 27526361 - 27526311
Alignment:
Q  10 agctggatgcatatctcccctaacaaacaaagaaagtttgattagagagga 60  Q
    |||||||| ||| | |||||||||||||||| ||||||| |||||||||||    
T  27526361 agctggatacatttgtcccctaacaaacaaataaagtttcattagagagga 27526311  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 21052844 - 21052880
Alignment:
Q  127 accaataataatttgaaaaaatgaaagtgattaaatg 163  Q
    |||| |||||||||||||||||||||||||| |||||    
T  21052844 accattaataatttgaaaaaatgaaagtgatgaaatg 21052880  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 37832686 - 37832642
Alignment:
Q  132 taataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgt 176  Q
    ||||| |||||||||||| |||||||| |||||||||| ||||||    
T  37832686 taatagtttgaaaaaatggaagtgattgaatgtaatcatatgtgt 37832642  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 20407905 - 20407942
Alignment:
Q  132 taataatttgaaaaaatgaaagtgattaaatgtaatca 169  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  20407905 taataatttgaaaaaatgaaagtgattgaatgtaatca 20407942  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 30107619 - 30107663
Alignment:
Q  131 ataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtg 175  Q
    |||||||||| ||||  |||||||||||||||||||||| |||||    
T  30107619 ataataatttaaaaagttgaaagtgattaaatgtaatcacatgtg 30107663  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 3497293 - 3497236
Alignment:
Q  119 acataaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgt 176  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||| |||||| ||||||    
T  3497293 acatagacaccaataataattttaaataatgaaagtgattgaatataatcacatgtgt 3497236  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 32483270 - 32483210
Alignment:
Q  122 taaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttgatgtc 183  Q
    ||||||||||||||||||| |||||| |||| ||||| ||||||| || || ||||||||||    
T  32483270 taaacaccaataataatttaaaaaaacgaaaatgattgaatgtaaacacat-tgttgatgtc 32483210  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 1678682 - 1678716
Alignment:
Q  132 taataatttgaaaaaatgaaagtgattaaatgtaa 166  Q
    ||||||||||| |||||||||||||||||||||||    
T  1678682 taataatttgagaaaatgaaagtgattaaatgtaa 1678716  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 7367548 - 7367605
Alignment:
Q  119 acataaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgt 176  Q
    ||||| |||||||||||||||||| |||||||| |||||| || |||| || ||||||    
T  7367548 acatagacaccaataataatttgagaaaatgaaggtgattgaacgtaaccacatgtgt 7367605  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 36895359 - 36895421
Alignment:
Q  122 taaacaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttgatgtca 184  Q
    ||||||||  ||||||||||| |||||  |||||||| |||||||||| |||||||| |||||    
T  36895359 taaacacctgtaataatttgataaaatataagtgattgaatgtaatcacatgtgttggtgtca 36895421  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 33331996 - 33331951
Alignment:
Q  131 ataataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgt 176  Q
    |||||||||||| ||||| |||||||||||||||||| | ||||||    
T  33331996 ataataatttgagaaaataaaagtgattaaatgtaattacatgtgt 33331951  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 35335596 - 35335640
Alignment:
Q  119 acataaacaccaataataatttgaaaaaatgaaagtgattaaatg 163  Q
    ||||| |||| | ||||||||||| ||||||||||||||||||||    
T  35335596 acatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 7251021 - 7250976
Alignment:
Q  125 acaccaataataatttgaaaaaatgaaagtgattaaatgtaatcaa 170  Q
    |||||||||||||||||| ||||||||||| ||| ||| |||||||    
T  7251021 acaccaataataatttgagaaaatgaaagtaattgaatataatcaa 7250976  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 41953205 - 41953165
Alignment:
Q  144 aaaatgaaagtgattaaatgtaatcaaatgtgttgatgtca 184  Q
    ||||||||||||||| |||||||||| |||||| |||||||    
T  41953205 aaaatgaaagtgattgaatgtaatcacatgtgtcgatgtca 41953165  T

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