View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4329_low_13 (Length: 271)

Name: NF4329_low_13
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4329_low_13
NF4329_low_13
[»] chr5 (1 HSPs)
chr5 (8-255)||(9358784-9359031)
[»] chr8 (1 HSPs)
chr8 (85-255)||(24877850-24878020)
[»] chr6 (1 HSPs)
chr6 (85-255)||(14089120-14089290)
[»] chr2 (1 HSPs)
chr2 (85-255)||(33697405-33697575)
[»] chr1 (1 HSPs)
chr1 (88-255)||(46457196-46457363)
[»] chr7 (1 HSPs)
chr7 (85-255)||(9952491-9952661)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 9358784 - 9359031
Alignment:
Q  8 aagaatatgttaatggacaatataagaagtaggaaaatgttacttctcccaagaaatcatttcccaagaacatcacggacatacaataatagatagatat 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9358784 aagaaaatgttaatggacaatataagaagtaggaaaatgttacttctcccaagaaatcatttcccaagaacatcacggacgtacaataatagatagatat 9358883  T
Q  108 aatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaagaatcaaatcgcttgtaccactg 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9358884 aatcacctccatgaagcttctgaatatagacacaactatcattactacttctagagaaaccttgttttatcataaaagaatcaaatcgcttgtaccactg 9358983  T
Q  208 tctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9358984 tctaggagattgtttcagcccgtaaagtgattttctcaagcgacatac 9359031  T

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Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 24877850 - 24878020
Alignment:
Q  85 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24877850 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaa 24877949  T
Q  185 gaatcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24877950 gagtcaaatcgcttgtaccactgtctaggagattgtttcagcccgtaaagtgattttctcaagcgacatac 24878020  T

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Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 14089120 - 14089290
Alignment:
Q  85 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14089120 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactgtcataactacttctagagaaaccttgttttatcataaaa 14089219  T
Q  185 gaatcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14089220 gagtcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 14089290  T

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Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 33697575 - 33697405
Alignment:
Q  85 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33697575 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactgtcataactacttctagagaaaccttgttttatcataaaa 33697476  T
Q  185 gaatcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33697475 gagtcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 33697405  T

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Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 46457363 - 46457196
Alignment:
Q  88 atacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaagaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  46457363 atacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactgtcataactacttctagagaaaccttgttttatattaaaagaa 46457264  T
Q  188 tcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46457263 tcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 46457196  T

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Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 9952661 - 9952491
Alignment:
Q  85 gacatacaataatagatagatataatcacctccatgaagcttctgaatatagacacaactatcataactacttctagagaaaccttgttttatcataaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  9952661 gacatacaataatagatagatataatcacctccatgaagcttctgcatatagacacaactgtcataactacttctagagataccttgttttatcattaaa 9952562  T
Q  185 gaatcaaatcgcttgtaccactgtctaggagattgtttcaacccgtaaagtgattttctcaagcgacatac 255  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  9952561 gaatcaaatcgcttgtaccactgtctaggagattgtttaaacccataaagtgattttctcaagagacatac 9952491  T

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