View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4329_low_17 (Length: 244)
Name: NF4329_low_17
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12963655 - 12963434
Alignment:
| Q |
1 |
tcgtagaataaaatgatggtataacattgcttatatcttcggtgcagaacatgaacaggttatgggaaagtagaggacaaaatacagtggagcatacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12963655 |
tcgtagaataaaatgatggtataacattgcttatatcttcggtgcagaacatgaacaggttatgggaaagtagaggacaaaatacagtggagcatacatt |
12963556 |
T |
|
| Q |
101 |
aatatacgataatgaacaaatcaatgatgttgttaatacgacaataatctcattttcatttgaatgttgatacaaatgcatgttgagtataattacaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12963555 |
aatatacgataatgaacaaatcaatgatgttgttaatacgacaataatctcattctcatttgaatgttgatacaaatgcatgttgagtataattacaaat |
12963456 |
T |
|
| Q |
201 |
aatatacacttcaccctcatgc |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
12963455 |
aatacacacttcaccctcatgc |
12963434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University