View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_low_4 (Length: 443)
Name: NF4329_low_4
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 183 - 427
Target Start/End: Original strand, 2170295 - 2170533
Alignment:
| Q |
183 |
ttcatttgaaattttcagagttagttagtttgaacaacacagattctggctatgacaaaggtattaatatttctatttaccaaatcatccttgtcttaac |
282 |
Q |
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| T |
2170295 |
ttcatttgaaattttcagagttagttagtttgaacaacacagattctggctatgacaaaggtattaatatttctatttaccaaatcatccttgtcttaac |
2170394 |
T |
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| Q |
283 |
caaattgaatatctcatttgtcacatttacatgttacatacatctccaaagtcactgtttctccaaaatggcatctcatgtatgtgtctctccttttcct |
382 |
Q |
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| T |
2170395 |
caaattgaatatctcatttgtcacatttacatgttacatacatctccaaagtcactgtttcaccaaaatggcatctcatgtatgtgtctc------tcct |
2170488 |
T |
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| Q |
383 |
tttctctttacattcaagttgtcaacattttaatgtcatatatct |
427 |
Q |
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| T |
2170489 |
tttctctttacattcaagttgtcaacattttaatgtcatatatct |
2170533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 2170137 - 2170261
Alignment:
| Q |
25 |
gttgaatctaaacaaaatcaaaccgatcatgttttaacttacatggattatatgtaaattaagctttgagttattaattattagattagatatgagatat |
124 |
Q |
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| T |
2170137 |
gttgaatctaaacaaaatcaaaccgatcatgttttaacttacatggattatatgtaaattaagctttgagttattaattattagattagatatgagatat |
2170236 |
T |
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| Q |
125 |
gatgtttaacgttggtagacatttt |
149 |
Q |
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| T |
2170237 |
gatgtttaacgttggtagacatttt |
2170261 |
T |
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