View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_low_5 (Length: 436)
Name: NF4329_low_5
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 16974642 - 16975046
Alignment:
| Q |
20 |
caatgccttctacaactttcactgtgcgttcggagtctagttttagtttagcaagagacaagctacacatcaaaggccttcagaatgcatcctacaactt |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |
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| T |
16974642 |
caatgccttctacaaatttcactgtgcgttcggagtctggttttagtttagcaagagacaagctatacatcaaaggccttcagaatacctcctacaactt |
16974741 |
T |
|
| Q |
120 |
gtcttgtggttgcgatgctgattccgctccacatcaaattctcgagcctcacagagatctcgagggttttgagatgagcggttatggagaagtaaatatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
16974742 |
gtcttgtggttgcgatgctgattccgctccacatcaaattctcgagcctcagagaggtctcgagggttttaagatgagcagttatggagaagtaaatatt |
16974841 |
T |
|
| Q |
220 |
tcaaactggatgataaatatttctaccaagtgcagaaactgtcgtcaacttcctcgacttggtagtttaaccactctttatctatctcaaatgagaaccg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16974842 |
tcaaactggatgataaatatttctaccaagtgcagaaactgtcgtcaacttcctcgacttggtagtttaaccactctttatctatctcaaatgagaaccg |
16974941 |
T |
|
| Q |
320 |
aaggagtagagtttctttcacaactttctgaattaagcattaaggccggtatccctcagcctgaattgccattcctttcctctgtagaaactgcagatga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16974942 |
aaggagtagagtttctttcacaactttctgaattaagcattaaggccggtatccctcagcctgaattgccattcctttcctctgtagaaactgcagacga |
16975041 |
T |
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| Q |
420 |
tgatg |
424 |
Q |
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||||| |
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| T |
16975042 |
tgatg |
16975046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 17068478 - 17068450
Alignment:
| Q |
78 |
caagctacacatcaaaggccttcagaatg |
106 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17068478 |
caagctacacatcaaaggccttcagaatg |
17068450 |
T |
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