View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_low_6 (Length: 421)
Name: NF4329_low_6
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 41967359 - 41967157
Alignment:
| Q |
16 |
taattatggaaggaaaacattgatttttaaagtgattaattactactatccaagagggaaactaaatatgtactcttgaaaattgaatcctgttcaacat |
115 |
Q |
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| T |
41967359 |
taattatggaaggaaaacattgatttttaaagtgattaattacta---tccaagagggaaactaaatatgtactcttgaaaattgaatcctgttcaacat |
41967263 |
T |
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| Q |
116 |
ctttgaactaaaaattaaaagcatcatttcctttgaaactctaagaaaatgagacggtgaaatagtaaaactnnnnnnnngatggtataccaaagtttta |
215 |
Q |
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| T |
41967262 |
ctttgaactaaaaattaaaagcatcatttcctttgaaactttaagaaaatgagacggtgaaatagtaaaactaaaaaaaagatggtataccaaagtttta |
41967163 |
T |
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| Q |
216 |
gtaacc |
221 |
Q |
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|||||| |
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| T |
41967162 |
gtaacc |
41967157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 41967078 - 41967033
Alignment:
| Q |
300 |
gaagaacaaatctttcatgtacccattttattcaatataagcacag |
345 |
Q |
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| T |
41967078 |
gaagaacaaatctttcatgtacccattttattcaatataagcacag |
41967033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 1228908 - 1228817
Alignment:
| Q |
94 |
aaaattgaatcctgttcaacatctttgaactaaaaattaaaagcatcatttcctttgaaactctaagaaaatgagacggtgaaatagtaaaa |
185 |
Q |
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| T |
1228908 |
aaaattaaatcgtgttcaagatctttgaactaaaaattaaaagcatcatttccttcgaaactttgagaaaattaaagggtgaaatagtaaaa |
1228817 |
T |
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