View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4329_low_7 (Length: 319)
Name: NF4329_low_7
Description: NF4329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4329_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 250523 - 250249
Alignment:
| Q |
1 |
catcatttgttcttttgttcttcctataacaaattaaacaacccaccacaaacttatttatcacacactcatcatcnnnnnnnncttccatgcttgctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
250523 |
catcatttgttcttttgttcttcctataacaaattaaacaacccaccacaaacttatttatcacacactcatcatcttttttttcttccatgcttgctcc |
250424 |
T |
|
| Q |
101 |
aactttctttctccaattttctcatcaacacttgtcttgtctttgaaaatttattttatggatttcaatatcttttttatgacctaattattaatatctt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
250423 |
aactttctttctcca-ttttctcatcaacacttgtcttgtctttgaaaatttattttatggattttaatatcttttttatgacctaattattaatatctt |
250325 |
T |
|
| Q |
201 |
tggtttcttccctatgagtccgatggttttttctttcatgagatgacttctgaaagaaaagtgaatttataaattg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250324 |
tggtttcttccctatgagtccgatggttttttctttcatgagatgacttctgaaagaaaagtgaatttataaattg |
250249 |
T |
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