View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330-Insertion-10 (Length: 85)

Name: NF4330-Insertion-10
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330-Insertion-10
NF4330-Insertion-10
[»] chr7 (3 HSPs)
chr7 (35-85)||(19061061-19061111)
chr7 (1-35)||(40232457-40232491)
chr7 (1-29)||(36820106-36820134)
[»] chr6 (10 HSPs)
chr6 (3-40)||(29514826-29514863)
chr6 (1-29)||(995793-995821)
chr6 (1-29)||(2398000-2398028)
chr6 (1-29)||(2667135-2667163)
chr6 (1-29)||(6142317-6142345)
chr6 (1-29)||(16969609-16969637)
chr6 (1-29)||(28483212-28483240)
chr6 (1-29)||(29795625-29795653)
chr6 (1-32)||(6188463-6188494)
chr6 (1-32)||(30699492-30699523)
[»] chr4 (7 HSPs)
chr4 (1-40)||(48380986-48381025)
chr4 (1-29)||(3708483-3708511)
chr4 (1-29)||(31152891-31152919)
chr4 (1-29)||(43447395-43447423)
chr4 (1-29)||(46608444-46608472)
chr4 (1-29)||(48652702-48652730)
chr4 (1-36)||(39171188-39171223)
[»] chr2 (6 HSPs)
chr2 (1-36)||(31603215-31603250)
chr2 (1-35)||(41437062-41437096)
chr2 (1-34)||(5096478-5096511)
chr2 (1-29)||(10333383-10333411)
chr2 (1-29)||(41319729-41319757)
chr2 (1-29)||(42754160-42754188)
[»] chr5 (5 HSPs)
chr5 (1-34)||(30721486-30721519)
chr5 (1-29)||(1780951-1780979)
chr5 (1-29)||(9936694-9936722)
chr5 (1-29)||(14607364-14607392)
chr5 (1-29)||(20040221-20040249)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-29)||(5606-5634)
[»] chr8 (6 HSPs)
chr8 (1-29)||(761780-761808)
chr8 (1-29)||(14378490-14378518)
chr8 (1-29)||(21132731-21132759)
chr8 (1-29)||(23437616-23437644)
chr8 (1-29)||(30464662-30464690)
chr8 (1-32)||(23547298-23547329)
[»] chr3 (3 HSPs)
chr3 (1-29)||(29455509-29455537)
chr3 (1-29)||(34555381-34555409)
chr3 (1-29)||(42098428-42098456)
[»] chr1 (5 HSPs)
chr1 (1-29)||(5606201-5606229)
chr1 (1-29)||(8250653-8250681)
chr1 (1-29)||(10100323-10100351)
chr1 (1-29)||(10124339-10124367)
chr1 (1-29)||(44741573-44741601)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 19061111 - 19061061
Alignment:
Q  35 ttttttctcctcattaggaatcagacgtgataatatcagtttcataatgag 85  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  19061111 ttttttcttctcattaggaatcagacgtgataatatcagttttataatgag 19061061  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40232457 - 40232491
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatatat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  40232457 actgtgtcacttattaagggacggagggagtatat 40232491  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36820106 - 36820134
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  36820106 actgtgtcacttattaagggacggaggga 36820134  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 29514863 - 29514826
Alignment:
Q  3 tgtgtcacttattaagggacggagggaatatatttttt 40  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29514863 tgtgtcacttattaagggacggagggagtatatttttt 29514826  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 995793 - 995821
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  995793 actgtgtcacttattaagggacggaggga 995821  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2398000 - 2398028
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  2398000 actgtgtcacttattaagggacggaggga 2398028  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2667163 - 2667135
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  2667163 actgtgtcacttattaagggacggaggga 2667135  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6142345 - 6142317
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  6142345 actgtgtcacttattaagggacggaggga 6142317  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16969609 - 16969637
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  16969609 actgtgtcacttattaagggacggaggga 16969637  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28483212 - 28483240
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  28483212 actgtgtcacttattaagggacggaggga 28483240  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29795625 - 29795653
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  29795625 actgtgtcacttattaagggacggaggga 29795653  T

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Target: chr6; HSP #9
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6188494 - 6188463
Alignment:
Q  1 actgtgtcacttattaagggacggagggaata 32  Q
    ||||||||||||||||||| ||||||||||||    
T  6188494 actgtgtcacttattaaggaacggagggaata 6188463  T

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Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 30699492 - 30699523
Alignment:
Q  1 actgtgtcacttattaagggacggagggaata 32  Q
    ||||||||||||||||||||| ||||||||||    
T  30699492 actgtgtcacttattaagggatggagggaata 30699523  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48380986 - 48381025
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatatatttttt 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  48380986 actgtgtcacttattaagggacggagggagtatttttttt 48381025  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3708483 - 3708511
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  3708483 actgtgtcacttattaagggacggaggga 3708511  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31152891 - 31152919
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  31152891 actgtgtcacttattaagggacggaggga 31152919  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43447395 - 43447423
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  43447395 actgtgtcacttattaagggacggaggga 43447423  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 46608444 - 46608472
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  46608444 actgtgtcacttattaagggacggaggga 46608472  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 48652702 - 48652730
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  48652702 actgtgtcacttattaagggacggaggga 48652730  T

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Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39171188 - 39171223
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatatatt 36  Q
    ||||| ||||||||||||||||||||||| ||||||    
T  39171188 actgtatcacttattaagggacggagggagtatatt 39171223  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31603250 - 31603215
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatatatt 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31603250 actgtgtcacttattaagggacggagggagtatatt 31603215  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41437062 - 41437096
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatatat 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  41437062 actgtgtcacttattaagggacggagggagtatat 41437096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5096478 - 5096511
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatata 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  5096478 actgtgtcacttattaagggacggagggagtata 5096511  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10333411 - 10333383
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  10333411 actgtgtcacttattaagggacggaggga 10333383  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41319757 - 41319729
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  41319757 actgtgtcacttattaagggacggaggga 41319729  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42754188 - 42754160
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  42754188 actgtgtcacttattaagggacggaggga 42754160  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30721519 - 30721486
Alignment:
Q  1 actgtgtcacttattaagggacggagggaatata 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  30721519 actgtgtcacttattaagggacggagggagtata 30721486  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1780979 - 1780951
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  1780979 actgtgtcacttattaagggacggaggga 1780951  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9936722 - 9936694
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  9936722 actgtgtcacttattaagggacggaggga 9936694  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14607392 - 14607364
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  14607392 actgtgtcacttattaagggacggaggga 14607364  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 20040249 - 20040221
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  20040249 actgtgtcacttattaagggacggaggga 20040221  T

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Target: scaffold0221 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 5606 - 5634
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  5606 actgtgtcacttattaagggacggaggga 5634  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 761780 - 761808
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  761780 actgtgtcacttattaagggacggaggga 761808  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14378518 - 14378490
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  14378518 actgtgtcacttattaagggacggaggga 14378490  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21132759 - 21132731
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  21132759 actgtgtcacttattaagggacggaggga 21132731  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23437644 - 23437616
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  23437644 actgtgtcacttattaagggacggaggga 23437616  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30464662 - 30464690
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  30464662 actgtgtcacttattaagggacggaggga 30464690  T

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Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23547298 - 23547329
Alignment:
Q  1 actgtgtcacttattaagggacggagggaata 32  Q
    ||||||||||||||||||| ||||||||||||    
T  23547298 actgtgtcacttattaaggaacggagggaata 23547329  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29455537 - 29455509
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  29455537 actgtgtcacttattaagggacggaggga 29455509  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34555381 - 34555409
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  34555381 actgtgtcacttattaagggacggaggga 34555409  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42098456 - 42098428
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  42098456 actgtgtcacttattaagggacggaggga 42098428  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5606229 - 5606201
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  5606229 actgtgtcacttattaagggacggaggga 5606201  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8250681 - 8250653
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  8250681 actgtgtcacttattaagggacggaggga 8250653  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10100351 - 10100323
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  10100351 actgtgtcacttattaagggacggaggga 10100323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10124339 - 10124367
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  10124339 actgtgtcacttattaagggacggaggga 10124367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44741573 - 44741601
Alignment:
Q  1 actgtgtcacttattaagggacggaggga 29  Q
    |||||||||||||||||||||||||||||    
T  44741573 actgtgtcacttattaagggacggaggga 44741601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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