View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330-Insertion-11 (Length: 139)

Name: NF4330-Insertion-11
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330-Insertion-11
NF4330-Insertion-11
[»] chr7 (3 HSPs)
chr7 (1-136)||(48317720-48317855)
chr7 (26-111)||(21146116-21146202)
chr7 (62-113)||(32359572-32359623)
[»] chr2 (4 HSPs)
chr2 (43-112)||(26275507-26275576)
chr2 (50-112)||(38285661-38285723)
chr2 (44-84)||(85965-86005)
chr2 (50-86)||(27898525-27898561)
[»] chr3 (1 HSPs)
chr3 (43-113)||(42168152-42168217)
[»] chr4 (1 HSPs)
chr4 (50-113)||(19184144-19184201)
[»] chr5 (2 HSPs)
chr5 (75-113)||(2851554-2851592)
chr5 (26-113)||(35859034-35859122)
[»] scaffold0088 (1 HSPs)
scaffold0088 (75-112)||(41613-41650)
[»] chr8 (1 HSPs)
chr8 (43-86)||(43748721-43748764)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 48317855 - 48317720
Alignment:
Q  1 tttttgaatgtaatctattctctcatccccttcctttcaaacattgaagcaaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaact 100  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48317855 tttttgaacgtaatctattcttccatccccttcctttgaaacattgaagcaaacacgtcgaattaaaaatattttctcccctcctcctcccttcaaaact 48317756  T
Q  101 ctcgaaccaaacgaatcttaaaagtacaatcaaaat 136  Q
    ||| ||||||||  | |||||||||||| |||||||    
T  48317755 ctcaaaccaaacagaccttaaaagtacagtcaaaat 48317720  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 21146202 - 21146116
Alignment:
Q  26 tccccttcctttc-aaacattgaagcaaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaa 111  Q
    |||||| |||||| ||| |||||| ||||||| || |||||||||||||| |||| ||| |  |||||  |||||||||||||||||    
T  21146202 tcccctccctttctaaaaattgaatcaaacacttcaaattaaaaatatttcctcctctctctttccctctaaaactctcgaaccaaa 21146116  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 32359623 - 32359572
Alignment:
Q  62 attaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaacg 113  Q
    |||||||||||| |||||||||  | ||||| |||||||||||||| |||||    
T  32359623 attaaaaatattatctcccctcttcttccctccaaaactctcgaactaaacg 32359572  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 26275507 - 26275576
Alignment:
Q  43 attgaagcaaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaac 112  Q
    |||||| ||||||| || ||||||||||||| ||||||||||||  |||| |||||||||||||||||||    
T  26275507 attgaaccaaacacttcaaattaaaaatattctctcccctcccctcccctccaaaactctcgaaccaaac 26275576  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 38285723 - 38285661
Alignment:
Q  50 caaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaac 112  Q
    ||||||| || |||||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  38285723 caaacacttcaaattaaaaatattcactcccctcccctccccttcaaaactctcgaaccaaac 38285661  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 86005 - 85965
Alignment:
Q  44 ttgaagcaaacacgtcgaattaaaaatattttctcccctcc 84  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  86005 ttgaatcaaacacgtcaaattaaaaatatttactcccctcc 85965  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 27898561 - 27898525
Alignment:
Q  50 caaacacgtcgaattaaaaatattttctcccctcccc 86  Q
    |||||||||| |||||||||||||| |||||||||||    
T  27898561 caaacacgtcaaattaaaaatatttcctcccctcccc 27898525  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 42168217 - 42168152
Alignment:
Q  43 attgaagcaaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaacg 113  Q
    |||||| ||||||| || ||||||||||||| |||||||||     |||||||||||||||||||||||||    
T  42168217 attgaaccaaacacatcaaattaaaaatattctctcccctc-----cccttcaaaactctcgaaccaaacg 42168152  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 19184144 - 19184201
Alignment:
Q  50 caaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaacg 113  Q
    |||||||||| |||||||||||||||||      ||||||||| ||||||||||||||||||||    
T  19184144 caaacacgtcaaattaaaaatattttct------cccctccctccaaaactctcgaaccaaacg 19184201  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 2851554 - 2851592
Alignment:
Q  75 tctcccctccccctcccttcaaaactctcgaaccaaacg 113  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  2851554 tctcccctccccttccctccaaaactctcgaaccaaacg 2851592  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 35859034 - 35859122
Alignment:
Q  26 tccccttcctttc-aaacattgaagcaaacacgtcgaattaaaaatattttctcccctccccctcccttcaaaactctcgaaccaaacg 113  Q
    ||||||||| ||| ||| |||||| ||||||| || |||||||||| |   ||||||| |||  |||| ||||||||||||||||||||    
T  35859034 tccccttcccttctaaaaattgaaccaaacacttcaaattaaaaatctcccctccccttccctcccctccaaaactctcgaaccaaacg 35859122  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 41613 - 41650
Alignment:
Q  75 tctcccctccccctcccttcaaaactctcgaaccaaac 112  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  41613 tctcccctccccttcccttcaaaactcttgaaccaaac 41650  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 43748764 - 43748721
Alignment:
Q  43 attgaagcaaacacgtcgaattaaaaatattttctcccctcccc 86  Q
    |||||| ||||||| || ||||||||||||| ||||||||||||    
T  43748764 attgaaccaaacacttcaaattaaaaatattatctcccctcccc 43748721  T

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