View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4330-Insertion-17 (Length: 187)

Name: NF4330-Insertion-17
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4330-Insertion-17
NF4330-Insertion-17
[»] chr8 (6 HSPs)
chr8 (1-187)||(30344221-30344407)
chr8 (112-171)||(3753004-3753063)
chr8 (112-171)||(19251732-19251791)
chr8 (112-171)||(19324916-19324975)
chr8 (112-171)||(45288147-45288206)
chr8 (1-63)||(24848095-24848157)
[»] chr6 (9 HSPs)
chr6 (1-187)||(18985370-18985556)
chr6 (1-141)||(11682672-11682814)
chr6 (70-142)||(22978679-22978753)
chr6 (70-142)||(23809650-23809724)
chr6 (112-171)||(34324997-34325056)
chr6 (70-142)||(2628006-2628080)
chr6 (115-171)||(22977466-22977522)
chr6 (115-171)||(23810880-23810936)
chr6 (112-163)||(2626560-2626611)
[»] chr5 (2 HSPs)
chr5 (1-187)||(23919961-23920147)
chr5 (19-85)||(1190757-1190823)
[»] chr7 (4 HSPs)
chr7 (48-187)||(33097948-33098089)
chr7 (4-60)||(25350687-25350743)
chr7 (4-60)||(25356381-25356437)
chr7 (112-171)||(42921787-42921846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-183)||(12593-12759)
[»] chr1 (1 HSPs)
chr1 (112-171)||(47388909-47388968)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30344407 - 30344221
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344407 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 30344308  T
Q  101 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30344307 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 30344221  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 3753063 - 3753004
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  3753063 ttgtcattgaaatattatacaaaatatacatgccataatacaatttccaaaagattagaa 3753004  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 19251791 - 19251732
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||| |||||| ||||||    
T  19251791 ttgtcattgaaatattatacaaaatatacatgccagaatacaattttcaaaagattagaa 19251732  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 19324975 - 19324916
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||| |||||| ||||||    
T  19324975 ttgtcattgaaatattatacaaaatatacatgccagaatacaattttcaaaagattagaa 19324916  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 45288147 - 45288206
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  45288147 ttgtcattgaaatattatacaaaatatacatgccaaaatacaatttccaaaagattagaa 45288206  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24848095 - 24848157
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttg 63  Q
    ||||||| ||||| || || ||||||||||| || |||||||||||||||||||| |||||||    
T  24848095 tacataacgtactgcagcacaaatatagatgctgccatgtagtgtacaaccaattcaaggttg 24848157  T

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Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 18985370 - 18985556
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985370 tacataatgtactccagcagaaatatagatgttgtcatgtagtgtataaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 18985469  T
Q  101 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985470 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 18985556  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 11682672 - 11682814
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 100  Q
    ||||||||||||| ||||| | ||||||||| || |||||||   |||||| ||||||||||| |||  ||||||||||||||||| |||||||||||||    
T  11682672 tacataatgtactgcaacacacatatagatgatgccatgtagccaacaacctatttaaggttgattataaaaaaagggttggattattaaatccaaacca 11682771  T
Q  101 ca-ttcaaa-acattgtcatcgaaatattatacaaaatataca 141  Q
    || |||||| |||||||||| ||||||||||||||||||||||    
T  11682772 catttcaaacacattgtcattgaaatattatacaaaatataca 11682814  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 22978679 - 22978753
Alignment:
Q  70 aaaaaagggttggattactaaatccaaaccaca--ttcaaaacattgtcatcgaaatattatacaaaatatacat 142  Q
    |||||||||||||||||||| |||||||||| |  ||||| |||| ||||||||||||||||||||| |||||||    
T  22978679 aaaaaagggttggattactatatccaaaccataatttcaacacatagtcatcgaaatattatacaaattatacat 22978753  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 23809724 - 23809650
Alignment:
Q  70 aaaaaagggttggattactaaatccaaaccaca--ttcaaaacattgtcatcgaaatattatacaaaatatacat 142  Q
    |||||||||||||||||||| |||||||||| |  ||||| |||| ||||||||||||||||||||| |||||||    
T  23809724 aaaaaagggttggattactatatccaaaccataatttcaacacatagtcatcgaaatattatacaaattatacat 23809650  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 34325056 - 34324997
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  34325056 ttgtcattgaaatattatacaaaatatacatgccagaatacaatttccaaaagattagaa 34324997  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 2628006 - 2628080
Alignment:
Q  70 aaaaaagggttggattactaaatccaaaccaca--ttcaaaacattgtcatcgaaatattatacaaaatatacat 142  Q
    |||||||||||||||||||| |||||||||| |  ||||| |||  ||||||||||||||||||||| |||||||    
T  2628006 aaaaaagggttggattactatatccaaaccataatttcaacacacagtcatcgaaatattatacaaattatacat 2628080  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 22977466 - 22977522
Alignment:
Q  115 tcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    |||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  22977466 tcattgaaatattatacaaaatatacatgccaaaatacaatttccaaaagattagaa 22977522  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 23810936 - 23810880
Alignment:
Q  115 tcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    |||| |||||||||||||||||||||||||||   ||||||||||||||| ||||||    
T  23810936 tcattgaaatattatacaaaatatacatgccaaaatacaatttccaaaagattagaa 23810880  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 2626560 - 2626611
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaa 163  Q
    ||||||| |||||||||||||||||||||||||||   ||||||||||||||    
T  2626560 ttgtcattgaaatattatacaaaatatacatgccaaaatacaatttccaaaa 2626611  T

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Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 23920147 - 23919961
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 100  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23920147 tacataatgtactccagcagaaatatagatgttgtcatgtagtgtataaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 23920048  T
Q  101 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23920047 cattcaaaacattgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaagcaag 23919961  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 1190757 - 1190823
Alignment:
Q  19 agaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggatt 85  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  1190757 agaaatatagatgctatcatgtagtgtacaaccaatttaaggttgattaccaaaaaagggttagatt 1190823  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 33097948 - 33098089
Alignment:
Q  48 aaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaaccacattcaaaac--attgtcatcgaaatattatacaaaatatacatgcc 145  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||    
T  33097948 aaccaatttaaggttgattagcaaaaatgggttggattactaaatccaaaccacatttaaaacgtattgtcattgaaatattatacaaaatatacatgcc 33098047  T
Q  146 agcgtacaatttccaaaagtttagaacttttcttcaagcaag 187  Q
    | | ||||| ||||||||| ||||||||||||||||||||||    
T  33098048 atcttacaacttccaaaagattagaacttttcttcaagcaag 33098089  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 25350687 - 25350743
Alignment:
Q  4 ataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaagg 60  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  25350687 ataatgtactacagcataaatatagatgatgtcatgtagtgtacaaccaatttaagg 25350743  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 25356381 - 25356437
Alignment:
Q  4 ataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaagg 60  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  25356381 ataatgtactacagcataaatatagatgatgtcatgtagtgtacaaccaatttaagg 25356437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 42921846 - 42921787
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  42921846 ttgtcattgaaatattatacaaaatatacatgccagaatacaatttccaaaagattagaa 42921787  T

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Target: scaffold0001 (Bit Score: 87; Significance: 6e-42; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 12759 - 12593
Alignment:
Q  1 tacataatgtactacaacagaaatatagatgttgtcatgtagtgtacaaccaatttaaggttggttaccaaaaaagggttggattactaaatccaaacca 100  Q
    ||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||                  |||||||||||||||| |    
T  12759 tacataatgtactgcagcagaaatgtagatgttgccatgtagtgtacaaccaatttaaggttgg------------------attactaaatccaaacga 12678  T
Q  101 cattcaaaacat--tgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaacttttcttcaag 183  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12677 cattcaacacatattgtcatcgaaatattatacaaaatatacatgccagcatacaatttccaaaagtttagaacttttcttcaag 12593  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 47388909 - 47388968
Alignment:
Q  112 ttgtcatcgaaatattatacaaaatatacatgccagcgtacaatttccaaaagtttagaa 171  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  47388909 ttgtcattgaaatattatacaaaatatacatgccagaatacaatttccaaaagattagaa 47388968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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