View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-22 (Length: 213)
Name: NF4330-Insertion-22
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-22 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 34193081 - 34192873
Alignment:
| Q |
5 |
cttctctaaatttctaaataatgattgttagggtaaattggaaaatggacaagatatagctgtgaagaggctttgcaatacttcaggacaaggaccaaat |
104 |
Q |
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| T |
34193081 |
cttctctaactttctaaataatgattgttagggtaaattggaaaatggacaagatatagctgtgaagaggctttgcaatacttcaggacaaggaccaaaa |
34192982 |
T |
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| Q |
105 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaaaacgatgagaaactcttgatat |
204 |
Q |
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| T |
34192981 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaaaacgatgagaaactcttgatat |
34192882 |
T |
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| Q |
205 |
atgaattca |
213 |
Q |
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||||||||| |
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| T |
34192881 |
atgaattca |
34192873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 34207428 - 34207636
Alignment:
| Q |
5 |
cttctctaaatttctaaataatgattgttagggtaaattggaaaatggacaagatatagctgtgaagaggctttgcaatacttcaggacaaggaccaaat |
104 |
Q |
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||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||| |
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| T |
34207428 |
cttctctaactttccaaataatgatggttagggtaaattggaaaatggacaagatatagcagtgaagaggctctgcaatacttcatcgcaagggccaaaa |
34207527 |
T |
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| Q |
105 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaaaacgatgagaaactcttgatat |
204 |
Q |
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| T |
34207528 |
gagttcataaatgaagttaagctaattgcgaatcttcagcacagaaatcttgtgaaactacttggctgttgcattcatctggacgagagactcttgatat |
34207627 |
T |
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| Q |
205 |
atgaattca |
213 |
Q |
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| T |
34207628 |
atgaattca |
34207636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 34218587 - 34218778
Alignment:
| Q |
22 |
ataatgattgttagggtaaattggaaaatggacaagatatagctgtgaagaggctttgcaatacttcaggacaaggaccaaatgagttcataaatgaagt |
121 |
Q |
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| T |
34218587 |
ataatgatcgtcagggtaacttggaaaatggacaagatatagctgtgaaaaggctttgcaatacttcaggacaaggaccaaaggaattcataaatgaagt |
34218686 |
T |
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| Q |
122 |
taagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaaaacgatgagaaactcttgatatatgaattca |
213 |
Q |
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| T |
34218687 |
taagctaattgcgaatcttcagcacagaaatcttgtgaaactaatcggctgttgcattcatgatgatgagagactactgatatatgaattca |
34218778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 31732684 - 31732761
Alignment:
| Q |
105 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaa |
182 |
Q |
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||||||||||||||||| ||||||||||| || ||||| || ||||||||||||||||| || ||||||||| ||||| |
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| T |
31732684 |
gagttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaa |
31732761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 31745585 - 31745662
Alignment:
| Q |
105 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaa |
182 |
Q |
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| T |
31745585 |
gagttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaa |
31745662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 31740251 - 31740327
Alignment:
| Q |
106 |
agttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgcgttcaa |
182 |
Q |
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|||||||||||||||| ||||||||||| || ||||| || ||||||||| ||||||| || ||||||||| ||||| |
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| T |
31740251 |
agttcataaatgaagtaaagctaattgcaaaacttcaacaccgaaatctactaaagctgctaggttgttgcattcaa |
31740327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 31701973 - 31702044
Alignment:
| Q |
105 |
gagttcataaatgaagttaagctaattgccaatcttcagcatcgaaatctagtaaagctacttggttgttgc |
176 |
Q |
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| T |
31701973 |
gagttcataaatgaagtaaaacttattgcaaatgttcagcaccgaaatcttgtaaagcttattggctgttgc |
31702044 |
T |
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