View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-24 (Length: 169)
Name: NF4330-Insertion-24
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 41875617 - 41875780
Alignment:
| Q |
6 |
gttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatattta |
105 |
Q |
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| T |
41875617 |
gttaagaggtatgatggtaaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctatattta |
41875716 |
T |
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| Q |
106 |
caccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgattaatgttgattat |
169 |
Q |
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| T |
41875717 |
taccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttgattaatgttgattat |
41875780 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 40868599 - 40868457
Alignment:
| Q |
13 |
ggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttacaccttc |
112 |
Q |
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| T |
40868599 |
ggtatggtggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatacatcc |
40868500 |
T |
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| Q |
113 |
ttctaatgatggccgcatactgaggtagagtgtcgaatgttga |
155 |
Q |
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| T |
40868499 |
ttataatgatgggcgcatactgaggtacactgttgaatgttga |
40868457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 24818078 - 24817944
Alignment:
| Q |
7 |
ttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttac |
106 |
Q |
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| T |
24818078 |
ttaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgctatctatat |
24817979 |
T |
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| Q |
107 |
accttcttctaatgatggccgcatactgaggtaga |
141 |
Q |
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| T |
24817978 |
accttcttcaaatgatggccgcataatgaggtaga |
24817944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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