View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-25 (Length: 115)
Name: NF4330-Insertion-25
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-25 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 12452128 - 12452239
Alignment:
| Q |
5 |
gcaaccatgtcgagagccaatgtgaaaatag-tctggccgtcgacgagacaagaaccggagcaggcgtccccaattctgcttgccaatcgaacatggcta |
103 |
Q |
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| T |
12452128 |
gcaaccatgtcgagagccaatgtgaaaataggtctgaccgtcgacgagacaagaaccggagcaggcgtccccaattctgcttgccaatcgaacatggcga |
12452227 |
T |
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| Q |
104 |
tcggcaaaactg |
115 |
Q |
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|||||| ||||| |
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| T |
12452228 |
tcggcagaactg |
12452239 |
T |
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Back To:
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Target: chr8 (Bit Score: 76; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 22715669 - 22715558
Alignment:
| Q |
5 |
gcaaccatgtcgagagccaatgtgaaaatag-tctggccgtcgacgagacaagaaccggagcaggcgtccccaattctgcttgccaatcgaacatggcta |
103 |
Q |
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|||||||||||||||||||||||| || ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22715669 |
gcaaccatgtcgagagccaatgtggaagtaggtctggtcgtcgacgagacaggaaccggagcaggcgtccccaattctgcttgccaatcgaacatgacta |
22715570 |
T |
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| Q |
104 |
tcggcaaaactg |
115 |
Q |
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| T |
22715569 |
tcagcagaactg |
22715558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 12480667 - 12480556
Alignment:
| Q |
5 |
gcaaccatgtcgagagccaatgtgaaaatag-tctggccgtcgacgagacaagaaccggagcaggcgtccccaattctgcttgccaatcgaacatggcta |
103 |
Q |
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|||||||||||||||||||| ||| | ||| | |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
12480667 |
gcaaccatgtcgagagccaaagtggtagtaggtttggctgtcgacgagacatgaaccggaacaggcgtccccaattctgcttgccaatcgaacatggcaa |
12480568 |
T |
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| Q |
104 |
tcggcaaaactg |
115 |
Q |
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| T |
12480567 |
ttggcagaactg |
12480556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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