View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-26 (Length: 161)
Name: NF4330-Insertion-26
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-26 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 8e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 36575620 - 36575489
Alignment:
| Q |
2 |
aacagttgaaacttgaaactaacacaatatcaattgaatttatccaagtcaa-caacgttgaataatttcnnnnnnnnttatattgaatttagctaagtt |
100 |
Q |
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| T |
36575620 |
aacagttgaaatttgaaactaacacaatatcaattgaatttctccaagtcaaacaacgttgaatcctttcaaaaaaaataatattgaatttagctaagtt |
36575521 |
T |
|
| Q |
101 |
tagtttcattaacttcctctttgcggttttag |
132 |
Q |
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| T |
36575520 |
tagtttcattaacttcctctttgcggttttag |
36575489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 16667989 - 16668115
Alignment:
| Q |
7 |
ttgaaacttgaaactaacacaatatcaattgaatttatccaagtcaa-caacgttgaataatttcnnnnnnnnttatattgaatttagctaagtttagtt |
105 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||| |||| ||||||||||||| |||||||| |
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| T |
16667989 |
ttgaaacttgaaacaaacacaatatcaattgaatttctccaagtcaaacaacgttgaatcctttcaaaaaaaattattttgaatttagctaggtttagtt |
16668088 |
T |
|
| Q |
106 |
tcattaacttcctctttgcggttttag |
132 |
Q |
| |
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| T |
16668089 |
tcattaacttcctctttgcggttttag |
16668115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 7e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 44516293 - 44516426
Alignment:
| Q |
2 |
aacagttgaaacttgaaactaacacaatatcaattgaatttatccaagtcaa-caacgttgaataatttcnnnnnnnn--ttatattgaatttagctaag |
98 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||| |
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| T |
44516293 |
aacagttgaaacttaaaactaacacaatatcaattgaatttctccaagtcaaacaacgttgaatcctttcaaaaaaaaaattatattgaatttagctaag |
44516392 |
T |
|
| Q |
99 |
tttagtttcattaacttcctctttgcggttttag |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
44516393 |
tttagtttcattaacttcctctttgcggttttag |
44516426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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