View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4330-Insertion-29 (Length: 258)
Name: NF4330-Insertion-29
Description: NF4330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4330-Insertion-29 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 47961588 - 47961335
Alignment:
| Q |
5 |
agattatagatatcattactttaggtttctgtaatacatatagcttcttagtaattaaagaagataaatattattgtagcagctgtagatgagttttcat |
104 |
Q |
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| T |
47961588 |
agattatagatatcattactttagatttctgtaatacacatagcttcttagtaattaaagaagataaatattattgtagcagctgtagatgagtttccat |
47961489 |
T |
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| Q |
105 |
ttgatgttgagttgtttaatgaattttcaactattataagcaatcaatgacattaataaaatatggagttaatgttttattcattttgcacaaattggct |
204 |
Q |
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| T |
47961488 |
ttgatgttgagttgtttaatgaattttcaactattataagcaatcaatgacattggcaaaatatggagtttatattttgttcattttgcacagtttggct |
47961389 |
T |
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| Q |
205 |
ttatcaggtgtatgcgcaggaaatttctgcagtctgtcaaattgattatccatg |
258 |
Q |
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| T |
47961388 |
ttatcaggtgtatgcacaggcaatttatgcagtctgtcaaattgattatccatg |
47961335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 50403871 - 50403721
Alignment:
| Q |
102 |
catttgatgttgagttgtttaatgaattttcaactattataagcaatcaatgacattaataaaatatggagttaatgttttattcattttgcacaaattg |
201 |
Q |
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| T |
50403871 |
catttgatgttgtgttgttttatgaatttttaactattataagcaatcaatgacattgacaaaatatggagttcatcttttgttcatcttgcaccaattg |
50403772 |
T |
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| Q |
202 |
gctttat-caggtgtatgcgcaggaaatttctgcagtctgtcaaattgatt |
251 |
Q |
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| T |
50403771 |
actttatgcaggtgtatgagcagtcaatttctgcagtgtgtcaaatggatt |
50403721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 25434527 - 25434607
Alignment:
| Q |
5 |
agattatagatatcattactttaggtttctgtaatacatatagcttcttagtaattaaagaagataaatattattgtagca |
85 |
Q |
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| T |
25434527 |
agattatagatatcattactttaggtttctgttatacacatagcttcttagtaattaaagaagataaatattattgtagca |
25434607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 10755535 - 10755614
Alignment:
| Q |
179 |
ttttattcattttgcacaaattggctttatcaggtgtatgcgcaggaaatttctgcagtctgtcaaattgattatccatg |
258 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
10755535 |
ttttgttcattttgcacaatttggctttatcaggtgtatgcgcaggcaatttctgcagtatgtcaaattgattatccatg |
10755614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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